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مشاهده بیشتر
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مشاهده بیشتر
کتابخانه
توضیح خلاصه
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A biological signal processing and feature extraction library.
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BioBuilder is used to create biology model in both all-atom and coarse-grained resolution
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bioc - Processing BioC, Brat, and PubTator with Python
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biological calculator
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Diagnostic Captioning
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Package was renamed from Biocarta v0.2.27 to Biocartograph because of an unintentional name clash
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BioCatalyzer: a rule-based tool to predict compound metabolism
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Python package that provides the certainty about biomedical statements.
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BiocFrame class to support complex types in Genomics. The goal is to not compete with `Pandas` but be inter-operable at some point.
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Generics for core data structures in biocpy
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Utilities to accompany *Biological Circuit Design* by Michael Elowitz and Justin Bois.
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Computational Biology tool for CLI use.
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Clients for online biomedical resources, usually REST APIs.
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I/O and utilities for the Consensus Multiple Alignment (CMA) file format.
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The semi-automatic segmentation and quantification of patchy areas in various biomedical images based on the assessment of their local edge densities.
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Bioinformatics code libraries and scripts
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A Python client for accessing data from the Biocode FIMS database.
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ensures that the biocommons namespace is correctly declared
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Example Package
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Python package for gene clustering
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Tools to synchronize bioconda packages and versions with Biocontainer images
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BioConsert, c implementation
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convert between bioinformatics formats
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Convert between NCBI pubmed/PMC and BIOC formats
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Classifier for ORganelle Genomes Inter alia
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Interface to all [BiocPy](https://github.com/BiocPy) packages
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Python interface to BioCyc REST API with caching mechanism
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A unifying framework for biomedical research knowledge graphs
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A python package for common biological data I/O
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A library for linking entities of biological knowledge bases.
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bioDBs is a Python package for getting data from biological databases.
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ZC Buildout recipe for setting up Riak.
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a package to cluster metabolomics data and plot dendrograms
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In silico Validation of Disease and Gene Sets, Clusterings or Subnetworks (DIGEST)
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In silico validation of Disease and Gene Sets, Clusterings or Subnetworks (DIGEST)
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Discovery of k-mer sequences associated with high rates of sequence diversification.
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Python bindings for the tool AEON.
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Biodiversity mapping
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Pyqtgraph based widgets for image analysis
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An open-source NLP research library, built on PyTorch.
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Deep Sequence Alignments.
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Pre-trained evolutionary scale models for proteins, from Facebook AI Research.
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Protein sequence representations Learned Using Structural information (https://arxiv.org/abs/1912.05625)
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Bayesian Inference Of ENsembles
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Combined bioenergetics and visual foraging model
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bioentity.
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Chip-Seq broad peak/domain finder.
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Recognize bio-medical entities from a text corpus
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BIO and BEISO evaluation library
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Python API for the Blue Brain BioExplorer
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Misc utilities and definitions not included or hidden in BioPython
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A Python package that generates fake biodata.
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Biomedical Feature Selection library
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another opts parser
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Common biochemical data fitting functions
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A set of python modules for accessing BioTuring single-cell database
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Software for working with data from Bio-Argo floats
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fluff : exploratory analysis and visualization of high-throughput sequencing data
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bioformats_package.jar installer for scyjava
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Pandas utilities for tab-delimited and other genomic files
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Bioinformatics utilities for molecular sequence analysis.
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Predict flash point and cetane number of biofuel
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bioFuzz
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Gaussian and Bionomial distributions
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genomes
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A collection of small bioinformatics helper functions
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GOPHER: GenOmic Profile-model compreHensive EvaluatoR
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Make diagrams for biological entities.
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A package to work with protein structure networks
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Python client for the BioGRID REST API webservice
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Graph-based clustering and annotation for improved de novo transcriptome analysis
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BioAnalyzer is a module that allows you to extract personnals informations from an instagram profile bio such as : Religion, Hobbies, Ethnicity, Emails, Paypal.me/, Snapchat, Twitter, Best Friends, Age, Location, Love Relationship, Love Relationship date, Facebooks, Astrologic Sign, Sexuality.
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bioimage - library to make working with biomedical images more comfortable
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Python functionality for the bioimage model zoo
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Parser and validator library for BioImage.IO specifications
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load bioimages for machine learning
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Implementations of U-Net and Siam U-Net for biological image segmentation
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Aggregation of functionalities needed in multiple projects
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Bioinformatics scripts
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Bioinformatics data analysis and visualization toolkit
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Randomly generate completely useless bioinformatics-related loading messages
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Bioinformatic algorithms from exercises on Rosalind
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An abstracted database model for the Bioinformatics Mill project
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Some utilities for sequence analysis
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Image reading, metadata management, and image writing for Microscopy images in Python
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Typing, base classes, and more for BioIO projects.
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A repository for modules and applications to aid in the design and analysis of Biological molecules, especially when working with Rosetta or PyRosetta.
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biojson
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Juno: read data generator
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A package for training and evaluating biological knowledge graph embeddings
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Reference-free variant discovery scalable to large eukaryotic genomes
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Utilities for processing, computing, and analyzing joint kinematics.