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مشاهده بیشتر
بسته
توضیح خلاصه
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GNU R html docs for statistical computing system functions
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Bioconductor data package used by several bioc tools
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BioConductor alternative CDF environments
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BioConductor annotation for microarrays
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GNU R Annotation Database Interface for BioConductor
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facilities for filtering Bioconductor annotation resources
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GNU R client to access AnnotationHub resources
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BioConductor methods normalization and visualization of microarray data
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access to the ArrayExpress Microarray Database at EBI
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Flexible, isoform-level differential expression analysis
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freezing Python dependencies inside Bioconductor packages
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Bioconductor basilisk installation utilities
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General utility functions for developing Bioconductor packages
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Bioconductor-specific package checks
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GNU R management of files across sessions
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generic functions for Bioconductor
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standard input and output for Bioconductor packages
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standard styles for vignettes and other Bioconductor documents
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set the appropriate version of Bioconductor packages
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Categorized views of R package repositories
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GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
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GNU R interface package for the BIOM file format
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GNU R bladder gene expression data illustrating batch effects
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BioConductor infrastructure for Biostrings-based genome data packages
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make complex heatmaps using GNU R
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GNU R determining cluster count and membership
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Cluster and Tree Conversion
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tool for analysis of Cufflinks RNA-Seq output
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infer biological activities from omics data
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BioConductor report of DEG analysis
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Functions on Rows and Columns of 'DelayedMatrix' Objects
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GNU R inference of differential exon usage in RNA-Seq
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Bioconductor managing expiration for cache directories
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Differential transcript usage and tuQTL analyses with
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BioConductor assessment of duplication rates in RNA-Seq datasets
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R package for RNA-Seq Differential Expression Analysis
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GNU R exploratory data analysis and normalization for RNA-Seq
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GNU R utilities to create and use an Ensembl based annotation database
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BioConductor client to access ExperimentHub resources
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Differential transcript and gene expression with inferential replicates
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GNU R lengths of mRNA transcripts for a number of genomes
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R package of functions for plotting genomic data
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BioConductor utilities for manipulating chromosome identifiers
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BioConductor species and taxonomy ID look up tables
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GNU R tools for making and manipulating transcript centric annotations
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Distributed computing by file or by range
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Get data from NCBI Gene Expression Omnibus (GEO)
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Visualization tools for genomic data
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annotation maps describing the entire Gene Ontology
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GNU R gene ontology analyser for RNA-seq and other length biased data
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Gene set enrichment data structures and methods
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Plotting data and annotation information along genomic coordinates
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Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts
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GNU R filter replicated high-throughput transcriptome sequencing data
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BioConductor hypergraph data structures
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GNU R independent hypothesis weighting
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base package for enabling powerful shiny web displays of Bioconductor objects
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Quality Assessment Tools for Oxford Nanopore MinION data
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GNU R client-side REST access to KEGG
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S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects
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BioCOnductor BigWig and BAM related utilities
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Integrative network analysis of omics data
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GNU R statistical analysis for sparse high-throughput sequencing
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Multi-Omics Factor Analysis (MOFA)
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Software for integrating multi-omics experiments in BioConductor
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GNU R comprehensive genome-wide analysis of mutational processes
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processing and QA for NanoString mRNA expression data
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Network Seriation And Modularization
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Exploratory analysis and differential expression for RNA-seq data
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Classes for high-throughput arrays supported by oligo and crlmm
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genome-wide annotation for Human
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smooth interfacing of different database packages
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GNU R identification of domain isotypes in pfam data
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GNU R handling and analysis of high-throughput microbiome census data
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activity inference from gene expression
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S4 generic functions for Bioconductor proteomics infrastructure
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copy number calling and SNV classification using targeted short read sequencing
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PWM enrichment analysis
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Comprehensive QTL annotation of GWAS results
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qusage: Quantitative Set Analysis for Gene Expression
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GNU R package for Q-value estimation for FDR control
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molecular informatics toolkit for compound-protein interaction
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Creating a DelayedMatrix of Regression Residuals
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GNU R gene set enrichment / projection displays
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GNU R client library for the WikiPathways API
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scalable analysis of differential transcript usage for RNA-sequencing
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GNU R parse and analyze Illumina SAV files
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creating a DelayedMatrix of scaled and centered values using GNU R
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Single-Cell Analysis Toolkit for Gene Expression Data in R
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Collection of Public Single-Cell RNA-Seq Datasets
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GNU R sequence logos for DNA sequence alignments
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S4 Classes for Single Cell Data
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Search Tool for the Retrieval of Interacting proteins database
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Variant annotations for structural variants
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BioConductor assay container
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GNU R/Bioconductor package for integrative analysis with GDC data
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Data for the TCGAbiolinksGUI package
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Transcript Quantification Import with Automatic Metadata
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transcript-level estimates for biological sequencing
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GNU R various transcript abundance quantifiers