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salmon_0.7.2+ds1-3_amd64.deb
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مشاهده بیشتر
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مشاهده بیشتر
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مشاهده بیشترتوضیحات
wicked-fast transcript quantification from RNA-seq data
| ویژگی | مقدار |
|---|---|
| سیستم عامل | Linux |
| توزیع | Ubuntu Bionic-18.04 |
| مخزن | Ubuntu universe amd64 |
| نام بسته | salmon |
| نام فایل بسته | salmon_0.7.2+ds1-3_amd64.deb |
| نسخه بسته | 0.7.2+ds1 |
| انتشار بسته | 3 |
| معماری بسته | amd64 |
| نگهدارنده | Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com> |
| تاریخ ساخت | - |
| هاست سازنده | - |
| نوع بسته | .deb |
| آدرس صفحه اصلی | https://github.com/COMBINE-lab/salmon |
| مجوز | - |
| حجم دانلود | 1505480 |
| حجم نصب | 5667 |
Salmon is a wicked-fast program to produce a highly-accurate, transcript-level
quantification estimates from RNA-seq data. Salmon achieves is accuracy and
speed via a number of different innovations, including the use of lightweight
alignments (accurate but fast-to-compute proxies for traditional read
alignments) and massively-parallel stochastic collapsed variational inference.
The result is a versatile tool that fits nicely into many different pipelines.
For example, you can choose to make use of the lightweight alignments by
providing Salmon with raw sequencing reads, or, if it is more convenient, you
can provide Salmon with regular alignments (e.g. computed with your favorite
aligner), and it will use the same wicked-fast, state-of-the-art inference
algorithm to estimate transcript-level abundances for your experiment.
نیازمندی
| مقدار | نام |
|---|---|
| - | libboost-filesystem1.65.1 |
| - | libboost-iostreams1.65.1 |
| - | libboost-program-options1.65.1 |
| - | libboost-system1.65.1 |
| >= 2.22 | libc6 |
| >= 2.0.1 | libdivsufsort3 |
| >= 1:4.2 | libgcc1 |
| - | libjellyfish-2.0-2 |
| >= 2.1.1 | libjemalloc1 |
| - | libstaden-read11 |
| - | libtbb2 |
| >= 1:1.1.4 | zlib1g |
| >= 1.0 | libjs-sphinxdoc |
| - | sphinx-rtd-theme-common |
نحوه نصب
نصب پکیج deb salmon:
sudo apt-get install salmon_0.7.2+ds1-3_amd64.deb
فایل ها
| مسیرها |
|---|
| ./usr/bin/salmon |
| ./usr/share/doc/salmon/TODO.Debian |
| ./usr/share/doc/salmon/changelog.Debian.gz |
| ./usr/share/doc/salmon/copyright |
| ./usr/share/doc/salmon/html/_images/ReadLibraryIllustration.png |
| ./usr/share/doc/salmon/html/_sources/building.rst.txt |
| ./usr/share/doc/salmon/html/_sources/file_formats.rst.txt |
| ./usr/share/doc/salmon/html/_sources/index.rst.txt |
| ./usr/share/doc/salmon/html/_sources/library_type.rst.txt |
| ./usr/share/doc/salmon/html/_sources/salmon.rst.txt |
| ./usr/share/doc/salmon/html/_static/ajax-loader.gif |
| ./usr/share/doc/salmon/html/_static/basic.css |
| ./usr/share/doc/salmon/html/_static/comment-bright.png |
| ./usr/share/doc/salmon/html/_static/comment-close.png |
| ./usr/share/doc/salmon/html/_static/comment.png |
| ./usr/share/doc/salmon/html/_static/down-pressed.png |
| ./usr/share/doc/salmon/html/_static/down.png |
| ./usr/share/doc/salmon/html/_static/file.png |
| ./usr/share/doc/salmon/html/_static/minus.png |
| ./usr/share/doc/salmon/html/_static/plus.png |
| ./usr/share/doc/salmon/html/_static/pygments.css |
| ./usr/share/doc/salmon/html/_static/up-pressed.png |
| ./usr/share/doc/salmon/html/_static/up.png |
| ./usr/share/doc/salmon/html/building.html |
| ./usr/share/doc/salmon/html/file_formats.html |
| ./usr/share/doc/salmon/html/genindex.html |
| ./usr/share/doc/salmon/html/index.html |
| ./usr/share/doc/salmon/html/library_type.html |
| ./usr/share/doc/salmon/html/objects.inv |
| ./usr/share/doc/salmon/html/salmon.html |
| ./usr/share/doc/salmon/html/search.html |
| ./usr/share/doc/salmon/html/searchindex.js |
| ./usr/share/doc-base/salmon |
| ./usr/share/man/man1/salmon-index.1.gz |
| ./usr/share/man/man1/salmon-quant.1.gz |
| ./usr/share/man/man1/salmon-swim.1.gz |
| ./usr/share/man/man1/salmon.1.gz |
| ./usr/share/doc/salmon/html/_static/css/badge_only.css -> ../../../../../sphinx_rtd_theme/static/css/badge_only.css |
| ./usr/share/doc/salmon/html/_static/css/theme.css -> ../../../../../sphinx_rtd_theme/static/css/theme.css |
| ./usr/share/doc/salmon/html/_static/doctools.js -> ../../../../javascript/sphinxdoc/1.0/doctools.js |
| ./usr/share/doc/salmon/html/_static/fonts/Inconsolata-Bold.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/Inconsolata-Bold.ttf |
| ./usr/share/doc/salmon/html/_static/fonts/Inconsolata-Regular.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/Inconsolata-Regular.ttf |
| ./usr/share/doc/salmon/html/_static/fonts/Lato-Bold.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Bold.ttf |
| ./usr/share/doc/salmon/html/_static/fonts/Lato-Regular.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Regular.ttf |
| ./usr/share/doc/salmon/html/_static/fonts/RobotoSlab-Bold.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Bold.ttf |
| ./usr/share/doc/salmon/html/_static/fonts/RobotoSlab-Regular.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Regular.ttf |
| ./usr/share/doc/salmon/html/_static/fonts/fontawesome-webfont.eot -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.eot |
| ./usr/share/doc/salmon/html/_static/fonts/fontawesome-webfont.svg -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.svg |
| ./usr/share/doc/salmon/html/_static/fonts/fontawesome-webfont.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.ttf |
| ./usr/share/doc/salmon/html/_static/fonts/fontawesome-webfont.woff -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.woff |
| ./usr/share/doc/salmon/html/_static/jquery.js -> ../../../../javascript/sphinxdoc/1.0/jquery.js |
| ./usr/share/doc/salmon/html/_static/js/modernizr.min.js -> ../../../../../sphinx_rtd_theme/static/js/modernizr.min.js |
| ./usr/share/doc/salmon/html/_static/js/theme.js -> ../../../../../sphinx_rtd_theme/static/js/theme.js |
| ./usr/share/doc/salmon/html/_static/searchtools.js -> ../../../../javascript/sphinxdoc/1.0/searchtools.js |
| ./usr/share/doc/salmon/html/_static/underscore.js -> ../../../../javascript/sphinxdoc/1.0/underscore.js |