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libjellyfish-2.0-dev_2.2.8-3build1_amd64.deb
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مشاهده بیشترتوضیحات
count k-mers in DNA sequences (development files of jellyfish)
| ویژگی | مقدار |
|---|---|
| سیستم عامل | Linux |
| توزیع | Ubuntu Bionic-18.04 |
| مخزن | Ubuntu universe amd64 |
| نام بسته | libjellyfish-2.0-dev |
| نام فایل بسته | libjellyfish-2.0-dev_2.2.8-3build1_amd64.deb |
| نسخه بسته | 2.2.8 |
| انتشار بسته | 3build1 |
| معماری بسته | amd64 |
| نگهدارنده | Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com> |
| تاریخ ساخت | - |
| هاست سازنده | - |
| نوع بسته | .deb |
| آدرس صفحه اصلی | http://www.cbcb.umd.edu/software/jellyfish/ |
| مجوز | - |
| حجم دانلود | 129400 |
| حجم نصب | 691 |
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains the development files (static library and
header files)
نیازمندی
| مقدار | نام |
|---|---|
| = 2.2.8-3build1 | libjellyfish-2.0-2 |
نحوه نصب
نصب پکیج deb libjellyfish-2.0-dev:
sudo apt-get install libjellyfish-2.0-dev_2.2.8-3build1_amd64.deb
فایل ها
| مسیرها |
|---|
| ./usr/include/jellyfish/allocators_mmap.hpp |
| ./usr/include/jellyfish/atomic_bits_array.hpp |
| ./usr/include/jellyfish/atomic_field.hpp |
| ./usr/include/jellyfish/atomic_gcc.hpp |
| ./usr/include/jellyfish/backtrace.hpp |
| ./usr/include/jellyfish/binary_dumper.hpp |
| ./usr/include/jellyfish/bloom_common.hpp |
| ./usr/include/jellyfish/bloom_counter2.hpp |
| ./usr/include/jellyfish/bloom_filter.hpp |
| ./usr/include/jellyfish/circular_buffer.hpp |
| ./usr/include/jellyfish/compare_and_swap.hpp |
| ./usr/include/jellyfish/cooperative_pool.hpp |
| ./usr/include/jellyfish/cooperative_pool2.hpp |
| ./usr/include/jellyfish/cpp_array.hpp |
| ./usr/include/jellyfish/divisor.hpp |
| ./usr/include/jellyfish/dumper.hpp |
| ./usr/include/jellyfish/err.hpp |
| ./usr/include/jellyfish/file_header.hpp |
| ./usr/include/jellyfish/generator_manager.hpp |
| ./usr/include/jellyfish/generic_file_header.hpp |
| ./usr/include/jellyfish/hash_counter.hpp |
| ./usr/include/jellyfish/int128.hpp |
| ./usr/include/jellyfish/jellyfish.hpp |
| ./usr/include/jellyfish/json.h |
| ./usr/include/jellyfish/large_hash_array.hpp |
| ./usr/include/jellyfish/large_hash_iterator.hpp |
| ./usr/include/jellyfish/locks_pthread.hpp |
| ./usr/include/jellyfish/mapped_file.hpp |
| ./usr/include/jellyfish/mer_dna.hpp |
| ./usr/include/jellyfish/mer_dna_bloom_counter.hpp |
| ./usr/include/jellyfish/mer_heap.hpp |
| ./usr/include/jellyfish/mer_iterator.hpp |
| ./usr/include/jellyfish/mer_overlap_sequence_parser.hpp |
| ./usr/include/jellyfish/mer_qual_iterator.hpp |
| ./usr/include/jellyfish/misc.hpp |
| ./usr/include/jellyfish/offsets_key_value.hpp |
| ./usr/include/jellyfish/parser_common.hpp |
| ./usr/include/jellyfish/rectangular_binary_matrix.hpp |
| ./usr/include/jellyfish/sam_format.hpp |
| ./usr/include/jellyfish/simple_circular_buffer.hpp |
| ./usr/include/jellyfish/sorted_dumper.hpp |
| ./usr/include/jellyfish/stdio_filebuf.hpp |
| ./usr/include/jellyfish/storage.hpp |
| ./usr/include/jellyfish/stream_iterator.hpp |
| ./usr/include/jellyfish/stream_manager.hpp |
| ./usr/include/jellyfish/text_dumper.hpp |
| ./usr/include/jellyfish/thread_exec.hpp |
| ./usr/include/jellyfish/time.hpp |
| ./usr/include/jellyfish/token_ring.hpp |
| ./usr/include/jellyfish/whole_sequence_parser.hpp |
| ./usr/lib/x86_64-linux-gnu/libjellyfish-2.0.a |
| ./usr/lib/x86_64-linux-gnu/libjellyfish-2.0.la |
| ./usr/lib/x86_64-linux-gnu/pkgconfig/jellyfish-2.0.pc |
| ./usr/share/doc/libjellyfish-2.0-dev/copyright |
| ./usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so -> libjellyfish-2.0.so.2.0.0 |
| ./usr/share/doc/libjellyfish-2.0-dev/changelog.Debian.gz -> ../libjellyfish-2.0-2/changelog.Debian.gz |