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python-pbgenomicconsensus_2.1.0-1_all.deb
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مشاهده بیشترتوضیحات
Pacific Biosciences variant and consensus caller (Python 2)
| ویژگی | مقدار |
|---|---|
| سیستم عامل | Linux |
| توزیع | Ubuntu Bionic-18.04 |
| مخزن | Ubuntu universe all |
| نام بسته | python-pbgenomicconsensus |
| نام فایل بسته | python-pbgenomicconsensus_2.1.0-1_all.deb |
| نسخه بسته | 2.1.0 |
| انتشار بسته | 1 |
| معماری بسته | all |
| نگهدارنده | Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com> |
| تاریخ ساخت | - |
| هاست سازنده | - |
| نوع بسته | .deb |
| آدرس صفحه اصلی | https://github.com/PacificBiosciences/GenomicConsensus |
| مجوز | - |
| حجم دانلود | 44700 |
| حجم نصب | 326 |
The GenomicConsensus package provides Quiver, Pacific Biosciences'
flagship consensus and variant caller. Quiver is an algorithm that finds
the maximum likelihood template sequence given PacBio reads of the template.
These reads are modeled using a conditional random field approach that
prescribes a probability to a read given a template sequence. In addition to
the base sequence of each read, Quiver uses several additional quality value
covariates that the base caller provides.
.
This package is part of the SMRTAnalysis suite and provides the Python 2
backend library.
نیازمندی
| مقدار | نام |
|---|---|
| - | python-h5py |
| - | python-numpy |
| - | python-pbcommand |
| - | python-pbconsensuscore |
| - | python-pbcore |
| << 2.8 | python:any |
| >= 2.7.5-5~ | python:any |
نحوه نصب
نصب پکیج deb python-pbgenomicconsensus:
sudo apt-get install python-pbgenomicconsensus_2.1.0-1_all.deb
فایل ها
| مسیرها |
|---|
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/ResultCollector.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/Worker.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/__init__.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/algorithmSelection.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/arrow/__init__.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/arrow/arrow.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/arrow/diploid.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/arrow/evidence.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/arrow/model.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/arrow/utils.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/consensus.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/io/VariantsGffWriter.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/io/__init__.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/io/utils.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/main.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/options.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/plurality/__init__.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/plurality/plurality.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/poa/__init__.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/poa/poa.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/__init__.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/diploid.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/evidence.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/model.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/quiver.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/resources/2013-03/GenomicConsensus/QuiverParameters.ini |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/resources/2013-05/GenomicConsensus/QuiverParameters.ini |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/resources/2013-09/GenomicConsensus/QuiverParameters.ini |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/resources/2014-03/GenomicConsensus/QuiverParameters.ini |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/resources/2014-09/GenomicConsensus/QuiverParameters.ini |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/quiver/utils.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/reference.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/utils.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/variants.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus/windows.py |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus-2.1.0.egg-info/PKG-INFO |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus-2.1.0.egg-info/dependency_links.txt |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus-2.1.0.egg-info/not-zip-safe |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus-2.1.0.egg-info/requires.txt |
| ./usr/lib/python2.7/dist-packages/GenomicConsensus-2.1.0.egg-info/top_level.txt |
| ./usr/share/doc/python-pbgenomicconsensus/NEWS.Debian.gz |
| ./usr/share/doc/python-pbgenomicconsensus/changelog.Debian.gz |
| ./usr/share/doc/python-pbgenomicconsensus/copyright |