معرفی شرکت ها
parsnp_1.2+dfsg-5_mips64el.deb
تبلیغات ما
مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.
مشاهده بیشتر
تبلیغات ما
مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.
مشاهده بیشتر
تبلیغات ما
مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.
مشاهده بیشتر
تبلیغات ما
مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.
مشاهده بیشتر
تبلیغات ما
مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.
مشاهده بیشترتوضیحات
rapid core genome multi-alignment
| ویژگی | مقدار |
|---|---|
| سیستم عامل | Linux |
| توزیع | Debian Buster-10 |
| مخزن | Debian main mips64el |
| نام بسته | parsnp |
| نام فایل بسته | parsnp_1.2+dfsg-5_mips64el.deb |
| نسخه بسته | 1.2+dfsg |
| انتشار بسته | 5 |
| معماری بسته | mips64el |
| نگهدارنده | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| تاریخ ساخت | - |
| هاست سازنده | - |
| نوع بسته | .deb |
| آدرس صفحه اصلی | http://harvest.readthedocs.org/en/latest/content/parsnp.html |
| مجوز | - |
| حجم دانلود | 530840 |
| حجم نصب | 959 |
Parsnp was designed to align the core genome of hundreds to thousands of
bacterial genomes within a few minutes to few hours. Input can be both
draft assemblies and finished genomes, and output includes variant (SNP)
calls, core genome phylogeny and multi-alignments. Parsnp leverages
contextual information provided by multi-alignments surrounding SNP
sites for filtration/cleaning, in addition to existing tools for
recombination detection/filtration and phylogenetic reconstruction.
جایگزین ها
| بسته | نسخه | معماری | مخزن |
|---|---|---|---|
| parsnp_1.2+dfsg-5_amd64.deb | 1.2+dfsg | amd64 | Debian main |
| parsnp_1.2+dfsg-5_arm64.deb | 1.2+dfsg | arm64 | Debian main |
| parsnp_1.2+dfsg-5_armel.deb | 1.2+dfsg | armel | Debian main |
| parsnp_1.2+dfsg-5_armhf.deb | 1.2+dfsg | armhf | Debian main |
| parsnp_1.2+dfsg-5_i386.deb | 1.2+dfsg | i386 | Debian main |
| parsnp_1.2+dfsg-5_mips.deb | 1.2+dfsg | mips | Debian main |
| parsnp_1.2+dfsg-5_mipsel.deb | 1.2+dfsg | mipsel | Debian main |
| parsnp_1.2+dfsg-5_ppc64el.deb | 1.2+dfsg | ppc64el | Debian main |
| parsnp_1.2+dfsg-5_s390x.deb | 1.2+dfsg | s390x | Debian main |
نیازمندی
| مقدار | نام |
|---|---|
| >= 2.27 | libc6 |
| >= 1:3.0 | libgcc1 |
| >= 4.9 | libgomp1 |
| >= 3.7+4565 | libmuscle1 |
| >= 5.2 | libstdc++6 |
| - | python:any |
| - | python-numpy |
| - | fasttree |
| - | mummer |
| - | phipack |
نحوه نصب
نصب پکیج deb parsnp:
sudo apt-get install parsnp_1.2+dfsg-5_mips64el.deb
فایل ها
| مسیرها |
|---|
| ./usr/lib/parsnp/parsnp |
| ./usr/share/doc/parsnp/changelog.Debian.gz |
| ./usr/share/doc/parsnp/copyright |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_12_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_15_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_16_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_17_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_18_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_19_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_1_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_21_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_25_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_2_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_3_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_4_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Bisha_1_2012.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Buraidah_1_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/EMC_2012.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/England-Qatar_2012.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/England1.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/FRA-UAE.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al-Batin_1_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al-Batin_2_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al_Batin_6_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Indiana-USA-1_Saudi_Arabia_2014.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_1_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_2014_C7149.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_2014_C7569.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_2014_C7770.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jordan-N3_2012.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/KF192507.1.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_1.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_13.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_19Dam.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/KJ477102.1.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-363.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-376.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-378.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-503.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-505.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/NC_019843.2.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Qatar3.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Qatar4.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_14_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_1_2012.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_2_2012.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_3_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_4_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_5_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_9_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Taif_1_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/genomes/Wadi-Ad-Dawasir_1_2013.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/ref/England1.fna.gz |
| ./usr/share/doc/parsnp/examples/mers_virus/ref/England1.gbk.gz |
| ./usr/share/man/man1/parsnp.1.gz |
| ./usr/share/parsnp/Parsnp.py |
| ./usr/share/parsnp/template.ini |
| ./usr/share/python/runtime.d/parsnp.rtupdate |
| ./usr/bin/parsnp -> ../share/parsnp/Parsnp.py |