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cct-examples_20170919+dfsg-1_all.deb
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مشاهده بیشترتوضیحات
example data for testing the package cct
| ویژگی | مقدار |
|---|---|
| سیستم عامل | Linux |
| توزیع | Debian Buster-10 |
| مخزن | Debian main all |
| نام بسته | cct-examples |
| نام فایل بسته | cct-examples_20170919+dfsg-1_all.deb |
| نسخه بسته | 20170919+dfsg |
| انتشار بسته | 1 |
| معماری بسته | all |
| نگهدارنده | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| تاریخ ساخت | - |
| هاست سازنده | - |
| نوع بسته | .deb |
| آدرس صفحه اصلی | http://stothard.afns.ualberta.ca/downloads/CCT/ |
| مجوز | - |
| حجم دانلود | 121500822 |
| حجم نصب | 130625 |
The CGView Comparison Tool (CCT) is a package for visually comparing
bacterial, plasmid, chloroplast, or mitochondrial sequences of interest
to existing genomes or sequence collections. The comparisons are
conducted using BLAST, and the BLAST results are presented in the form
of graphical maps that can also show sequence features, gene and protein
names, COG category assignments, and sequence composition
characteristics. CCT can generate maps in a variety of sizes, including
400 Megapixel maps suitable for posters. Comparisons can be conducted
within a particular species or genus, or all available genomes can be
used. The entire map creation process, from downloading sequences to
redrawing zoomed maps, can be completed easily using scripts included
with the CCT. User-defined features or analysis results can be included
on maps, and maps can be extensively customized. To simplify program
setup, a CCT virtual machine that includes all dependencies preinstalled
is available. Detailed tutorials illustrating the use of CCT are
included with the CCT documentation.
.
This package provides the data which can be used as example. These are
the same data as used in autopkgtest.
نیازمندی
| مقدار | نام |
|---|---|
| - | bioperl |
| - | cgview |
نحوه نصب
نصب پکیج deb cct-examples:
sudo apt-get install cct-examples_20170919+dfsg-1_all.deb
فایل ها
| مسیرها |
|---|
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/blast/blast_db/NC_007717.gbk_split.log |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/blast/blast_db/NC_007717.gbk_split.nhr |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/blast/blast_db/NC_007717.gbk_split.nin |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/blast/blast_db/NC_007717.gbk_split.nsq |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/blast/blast_db/NC_007718.gbk_split.log |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/blast/blast_db/NC_007718.gbk_split.nhr |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/blast/blast_db/NC_007718.gbk_split.nin |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/blast/blast_db/NC_007718.gbk_split.nsq |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/blast/blast_db/NC_007720.gbk_split.log |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/blast/blast_db/NC_007720.gbk_split.nhr |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/blast/blast_db/NC_007720.gbk_split.nin |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/blast/blast_db/NC_007720.gbk_split.nsq |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/blast/blast_results_local/NC_007719_DNA_vs_NC_007717.gbk_split_DNA_blastn.gz |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/blast/blast_results_local/NC_007719_DNA_vs_NC_007718.gbk_split_DNA_blastn.gz |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/blast/blast_results_local/NC_007719_DNA_vs_NC_007720.gbk_split_DNA_blastn.gz |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/cgview_xml_builder.pl.gz |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/comparison_genomes/NC_007717.gbk.gz |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/comparison_genomes/NC_007718.gbk.gz |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/comparison_genomes/NC_007720.gbk.gz |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/comparison_genomes/split/NC_007717.gbk_split.gz |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/comparison_genomes/split/NC_007718.gbk_split.gz |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/comparison_genomes/split/NC_007720.gbk_split.gz |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/features/NC_007719.gbk_cds_cogs.gff |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/labels_to_show.txt |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/log.txt.gz |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/maps/cgview_xml/sample_project_1_project_settings_c.conf_medium.xml.gz |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/maps/sample_project_1_project_settings_a.html |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/maps/sample_project_1_project_settings_a.png |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/maps/sample_project_1_project_settings_b.html |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/maps/sample_project_1_project_settings_b.png |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/maps/sample_project_1_project_settings_c.html |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/maps/sample_project_1_project_settings_c.png |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/project_settings_a.conf |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/project_settings_b.conf |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/project_settings_c.conf |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/reference_genome/NC_007719.gbk.gz |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_1/reference_genome/split/NC_007719.gbk_split.gz |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_2/blast/blast_db/Methanococcus_maripaludis.gbk_split.log |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_2/blast/blast_db/Methanococcus_maripaludis.gbk_split.nhr |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_2/blast/blast_db/Methanococcus_maripaludis.gbk_split.nin |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_2/blast/blast_db/Methanococcus_maripaludis.gbk_split.nsq.gz |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_2/blast/blast_db/Methanosarcina_acetivorans.gbk_split.log |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_2/blast/blast_db/Methanosarcina_acetivorans.gbk_split.nhr |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_2/blast/blast_db/Methanosarcina_acetivorans.gbk_split.nin |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_2/blast/blast_db/Methanosarcina_acetivorans.gbk_split.nsq.gz |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_2/blast/blast_db/Thermococcus_kodakaraensis.gbk_split.log |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_2/blast/blast_db/Thermococcus_kodakaraensis.gbk_split.nhr |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_2/blast/blast_db/Thermococcus_kodakaraensis.gbk_split.nin |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_2/blast/blast_db/Thermococcus_kodakaraensis.gbk_split.nsq.gz |
| ./usr/share/doc/cct/examples/sample_projects/sample_project_2/blast/blast_results_local/Methanobacterium_thermoautotrophicum_DNA_vs_Methanococcus_maripaludis.gbk_split_DNA_blastn.gz |
| ... and 269 more |