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r-bioc-genomicalignments_1.26.0-1_arm64.deb

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توضیحات

BioConductor representation and manipulation of short genomic alignments
ویژگی مقدار
سیستم عامل Linux
توزیع Debian Bullseye-11
مخزن Debian main arm64
نام بسته r-bioc-genomicalignments
نام فایل بسته r-bioc-genomicalignments_1.26.0-1_arm64.deb
نسخه بسته 1.26.0
انتشار بسته 1
معماری بسته arm64
نگهدارنده Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
تاریخ ساخت -
هاست سازنده -
نوع بسته .deb
آدرس صفحه اصلی https://bioconductor.org/packages/GenomicAlignments/
مجوز -
حجم دانلود 2195060
حجم نصب 2987
This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.


جایگزین ها

بسته نسخه معماری مخزن
r-bioc-genomicalignments_1.26.0-1_amd64.deb 1.26.0 amd64 Debian main
r-bioc-genomicalignments_1.26.0-1_armel.deb 1.26.0 armel Debian main
r-bioc-genomicalignments_1.26.0-1_armhf.deb 1.26.0 armhf Debian main
r-bioc-genomicalignments_1.26.0-1_i386.deb 1.26.0 i386 Debian main
r-bioc-genomicalignments_1.26.0-1_mips64el.deb 1.26.0 mips64el Debian main
r-bioc-genomicalignments_1.26.0-1_mipsel.deb 1.26.0 mipsel Debian main
r-bioc-genomicalignments_1.26.0-1_ppc64el.deb 1.26.0 ppc64el Debian main
r-bioc-genomicalignments_1.26.0-1_s390x.deb 1.26.0 s390x Debian main


نیازمندی

مقدار نام
>= 4.0.3-1 r-base-core
- r-api-4.0
- r-api-bioc-3.12
>= 0.15.3 r-bioc-biocgenerics
>= 0.27.12 r-bioc-s4vectors
>= 2.23.9 r-bioc-iranges
>= 1.13.1 r-bioc-genomeinfodb
>= 1.41.5 r-bioc-genomicranges
>= 1.9.13 r-bioc-summarizedexperiment
>= 2.55.7 r-bioc-biostrings
>= 1.31.2 r-bioc-rsamtools
- r-bioc-biocparallel
>= 2.17 libc6


نحوه نصب


نصب پکیج deb r-bioc-genomicalignments:

    sudo apt-get install r-bioc-genomicalignments_1.26.0-1_arm64.deb


فایل ها

مسیرها
./usr/lib/R/site-library/GenomicAlignments/CITATION
./usr/lib/R/site-library/GenomicAlignments/DESCRIPTION
./usr/lib/R/site-library/GenomicAlignments/INDEX
./usr/lib/R/site-library/GenomicAlignments/Meta/Rd.rds
./usr/lib/R/site-library/GenomicAlignments/Meta/features.rds
./usr/lib/R/site-library/GenomicAlignments/Meta/hsearch.rds
./usr/lib/R/site-library/GenomicAlignments/Meta/links.rds
./usr/lib/R/site-library/GenomicAlignments/Meta/nsInfo.rds
./usr/lib/R/site-library/GenomicAlignments/Meta/package.rds
./usr/lib/R/site-library/GenomicAlignments/Meta/vignette.rds
./usr/lib/R/site-library/GenomicAlignments/NAMESPACE
./usr/lib/R/site-library/GenomicAlignments/NEWS
./usr/lib/R/site-library/GenomicAlignments/R/GenomicAlignments
./usr/lib/R/site-library/GenomicAlignments/R/GenomicAlignments.rdb
./usr/lib/R/site-library/GenomicAlignments/R/GenomicAlignments.rdx
./usr/lib/R/site-library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.R
./usr/lib/R/site-library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.Rnw
./usr/lib/R/site-library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.pdf
./usr/lib/R/site-library/GenomicAlignments/doc/OverlapEncodings.R
./usr/lib/R/site-library/GenomicAlignments/doc/OverlapEncodings.Rnw
./usr/lib/R/site-library/GenomicAlignments/doc/OverlapEncodings.pdf
./usr/lib/R/site-library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.R
./usr/lib/R/site-library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.Rnw
./usr/lib/R/site-library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.pdf
./usr/lib/R/site-library/GenomicAlignments/doc/index.html
./usr/lib/R/site-library/GenomicAlignments/doc/summarizeOverlaps.R
./usr/lib/R/site-library/GenomicAlignments/doc/summarizeOverlaps.Rnw
./usr/lib/R/site-library/GenomicAlignments/doc/summarizeOverlaps.pdf
./usr/lib/R/site-library/GenomicAlignments/extdata/sm_treated1.bam
./usr/lib/R/site-library/GenomicAlignments/extdata/sm_untreated1.bam
./usr/lib/R/site-library/GenomicAlignments/help/AnIndex
./usr/lib/R/site-library/GenomicAlignments/help/GenomicAlignments.rdb
./usr/lib/R/site-library/GenomicAlignments/help/GenomicAlignments.rdx
./usr/lib/R/site-library/GenomicAlignments/help/aliases.rds
./usr/lib/R/site-library/GenomicAlignments/help/paths.rds
./usr/lib/R/site-library/GenomicAlignments/html/00Index.html
./usr/lib/R/site-library/GenomicAlignments/html/R.css
./usr/lib/R/site-library/GenomicAlignments/libs/GenomicAlignments.so
./usr/lib/R/site-library/GenomicAlignments/unitTests/test_GAlignments-class.R
./usr/lib/R/site-library/GenomicAlignments/unitTests/test_GAlignmentsList-class.R
./usr/lib/R/site-library/GenomicAlignments/unitTests/test_cigar-utils.R
./usr/lib/R/site-library/GenomicAlignments/unitTests/test_coordinate-mapping-methods.R
./usr/lib/R/site-library/GenomicAlignments/unitTests/test_findSpliceOverlaps-methods.R
./usr/lib/R/site-library/GenomicAlignments/unitTests/test_intra-range-methods.R
./usr/lib/R/site-library/GenomicAlignments/unitTests/test_readGAlignmentPairs.R
./usr/lib/R/site-library/GenomicAlignments/unitTests/test_readGAlignments.R
./usr/lib/R/site-library/GenomicAlignments/unitTests/test_summarizeOverlaps-methods.R
./usr/share/doc/r-bioc-genomicalignments/README.test
./usr/share/doc/r-bioc-genomicalignments/changelog.Debian.gz
./usr/share/doc/r-bioc-genomicalignments/copyright