معرفی شرکت ها
paleomix_1.3.7-3_amd64.deb
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مشاهده بیشتر
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مشاهده بیشتر
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مشاهده بیشتر
تبلیغات ما
مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.
مشاهده بیشتر
تبلیغات ما
مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.
مشاهده بیشترتوضیحات
pipelines and tools for the processing of ancient and modern HTS data
| ویژگی | مقدار |
|---|---|
| سیستم عامل | Linux |
| توزیع | Debian Bookworm-12 |
| مخزن | Debian main amd64 |
| نام بسته | paleomix |
| نام فایل بسته | paleomix_1.3.7-3_amd64.deb |
| نسخه بسته | 1.3.7 |
| انتشار بسته | 3 |
| معماری بسته | amd64 |
| نگهدارنده | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| تاریخ ساخت | - |
| هاست سازنده | - |
| نوع بسته | .deb |
| آدرس صفحه اصلی | https://geogenetics.ku.dk/publications/paleomix |
| مجوز | - |
| حجم دانلود | 983840 |
| حجم نصب | 2006 |
The PALEOMIX pipelines are a set of pipelines and tools designed to aid
the rapid processing of High-Throughput Sequencing (HTS) data: The BAM
pipeline processes de-multiplexed reads from one or more samples,
through sequence processing and alignment, to generate BAM alignment
files useful in downstream analyses; the Phylogenetic pipeline carries
out genotyping and phylogenetic inference on BAM alignment files, either
produced using the BAM pipeline or generated elsewhere; and the Zonkey
pipeline carries out a suite of analyses on low coverage equine
alignments, in order to detect the presence of F1-hybrids in
archaeological assemblages. In addition, PALEOMIX aids in metagenomic
analysis of the extracts.
.
The pipelines have been designed with ancient DNA (aDNA) in mind, and
includes several features especially useful for the analyses of ancient
samples, but can all be for the processing of modern samples, in order
to ensure consistent data processing.
جایگزین ها
| بسته | نسخه | معماری | مخزن |
|---|---|---|---|
| paleomix_1.3.7-3_arm64.deb | 1.3.7 | arm64 | Debian main |
نیازمندی
| مقدار | نام |
|---|---|
| - | python3-coloredlogs |
| - | python3-configargparse |
| - | python3-pysam |
| - | python3-ruamel.yaml |
| - | python3-setproctitle |
| - | python3:any |
| - | adapterremoval |
| - | bedtools |
| - | bowtie2 |
| - | bwa |
| - | bcftools |
| - | examl |
| - | mafft |
| - | mapdamage |
| - | phylip |
| - | picard-tools |
| - | r-base-core |
| - | radiant |
| - | raxml |
| - | samtools |
نحوه نصب
نصب پکیج deb paleomix:
sudo apt-get install paleomix_1.3.7-3_amd64.deb
فایل ها
| مسیرها |
|---|
| ./usr/bin/paleomix |
| ./usr/lib/python3/dist-packages/paleomix/__init__.py |
| ./usr/lib/python3/dist-packages/paleomix/atomiccmd/__init__.py |
| ./usr/lib/python3/dist-packages/paleomix/atomiccmd/builder.py |
| ./usr/lib/python3/dist-packages/paleomix/atomiccmd/command.py |
| ./usr/lib/python3/dist-packages/paleomix/atomiccmd/pprint.py |
| ./usr/lib/python3/dist-packages/paleomix/atomiccmd/sets.py |
| ./usr/lib/python3/dist-packages/paleomix/common/__init__.py |
| ./usr/lib/python3/dist-packages/paleomix/common/argparse.py |
| ./usr/lib/python3/dist-packages/paleomix/common/bamfiles.py |
| ./usr/lib/python3/dist-packages/paleomix/common/bedtools.py |
| ./usr/lib/python3/dist-packages/paleomix/common/fileutils.py |
| ./usr/lib/python3/dist-packages/paleomix/common/formats/__init__.py |
| ./usr/lib/python3/dist-packages/paleomix/common/formats/_common.py |
| ./usr/lib/python3/dist-packages/paleomix/common/formats/_graph.py |
| ./usr/lib/python3/dist-packages/paleomix/common/formats/fasta.py |
| ./usr/lib/python3/dist-packages/paleomix/common/formats/fastq.py |
| ./usr/lib/python3/dist-packages/paleomix/common/formats/msa.py |
| ./usr/lib/python3/dist-packages/paleomix/common/formats/newick.py |
| ./usr/lib/python3/dist-packages/paleomix/common/formats/phylip.py |
| ./usr/lib/python3/dist-packages/paleomix/common/logging.py |
| ./usr/lib/python3/dist-packages/paleomix/common/makefile.py |
| ./usr/lib/python3/dist-packages/paleomix/common/procs.py |
| ./usr/lib/python3/dist-packages/paleomix/common/rtools.py |
| ./usr/lib/python3/dist-packages/paleomix/common/sampling.py |
| ./usr/lib/python3/dist-packages/paleomix/common/sequences.py |
| ./usr/lib/python3/dist-packages/paleomix/common/system.py |
| ./usr/lib/python3/dist-packages/paleomix/common/testing.py |
| ./usr/lib/python3/dist-packages/paleomix/common/text.py |
| ./usr/lib/python3/dist-packages/paleomix/common/timer.py |
| ./usr/lib/python3/dist-packages/paleomix/common/utilities.py |
| ./usr/lib/python3/dist-packages/paleomix/common/vcffilter.py |
| ./usr/lib/python3/dist-packages/paleomix/common/vcfwrap.py |
| ./usr/lib/python3/dist-packages/paleomix/common/versions.py |
| ./usr/lib/python3/dist-packages/paleomix/main.py |
| ./usr/lib/python3/dist-packages/paleomix/node.py |
| ./usr/lib/python3/dist-packages/paleomix/nodegraph.py |
| ./usr/lib/python3/dist-packages/paleomix/nodes/__init__.py |
| ./usr/lib/python3/dist-packages/paleomix/nodes/adapterremoval.py |
| ./usr/lib/python3/dist-packages/paleomix/nodes/bedtools.py |
| ./usr/lib/python3/dist-packages/paleomix/nodes/bowtie2.py |
| ./usr/lib/python3/dist-packages/paleomix/nodes/bwa.py |
| ./usr/lib/python3/dist-packages/paleomix/nodes/commands.py |
| ./usr/lib/python3/dist-packages/paleomix/nodes/examl.py |
| ./usr/lib/python3/dist-packages/paleomix/nodes/formats.py |
| ./usr/lib/python3/dist-packages/paleomix/nodes/mafft.py |
| ./usr/lib/python3/dist-packages/paleomix/nodes/mapdamage.py |
| ./usr/lib/python3/dist-packages/paleomix/nodes/newick.py |
| ./usr/lib/python3/dist-packages/paleomix/nodes/phylip.py |
| ./usr/lib/python3/dist-packages/paleomix/nodes/picard.py |
| ... and 157 more |