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libtfbs-perl_0.7.1+ds-2+b2_arm64.deb
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مشاهده بیشتر
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مشاهده بیشتر
تبلیغات ما
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مشاهده بیشتر
تبلیغات ما
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مشاهده بیشترتوضیحات
scanning DNA sequence with a position weight matrix
| ویژگی | مقدار |
|---|---|
| سیستم عامل | Linux |
| توزیع | Debian Bookworm-12 |
| مخزن | Debian main arm64 |
| نام بسته | libtfbs-perl |
| نام فایل بسته | libtfbs-perl_0.7.1+ds-2+b2_arm64.deb |
| نسخه بسته | 0.7.1+ds |
| انتشار بسته | 2+b2 |
| معماری بسته | arm64 |
| نگهدارنده | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| تاریخ ساخت | - |
| هاست سازنده | - |
| نوع بسته | .deb |
| آدرس صفحه اصلی | http://tfbs.genereg.net |
| مجوز | - |
| حجم دانلود | 231972 |
| حجم نصب | 1038 |
The TFBS perl modules comprise a set of routines to interact with the
Transfac and Jaspar databases that describe a special family of proteins,
the transcription factors. These bind to genomic DNA to initiate (or
prevent) the readout of a gene. Once multiple binding sites are known
for a transcription factor, these are gathered in a single file and are
aligned in order to find position-specific characteristica that might
be used to predict such binding events in novel DNA sequences.
.
If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002)
TFBS: Computational framework for transcription factor binding site analysis.
Bioinformatics 18:1135-1136".
.
Note: the TFBS perl module is no longer under active development. All the
functionality can be found in the TFBSTools Bioconductor package; users are
highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>
جایگزین ها
| بسته | نسخه | معماری | مخزن |
|---|---|---|---|
| libtfbs-perl_0.7.1+ds-2+b2_amd64.deb | 0.7.1+ds | amd64 | Debian main |
| libtfbs-perl_0.7.1+ds-2+b2_armel.deb | 0.7.1+ds | armel | Debian main |
| libtfbs-perl_0.7.1+ds-2+b2_armhf.deb | 0.7.1+ds | armhf | Debian main |
| libtfbs-perl_0.7.1+ds-2+b2_i386.deb | 0.7.1+ds | i386 | Debian main |
| libtfbs-perl_0.7.1+ds-2+b2_mips64el.deb | 0.7.1+ds | mips64el | Debian main |
| libtfbs-perl_0.7.1+ds-2+b2_mipsel.deb | 0.7.1+ds | mipsel | Debian main |
| libtfbs-perl_0.7.1+ds-2+b2_ppc64el.deb | 0.7.1+ds | ppc64el | Debian main |
| libtfbs-perl_0.7.1+ds-2+b2_s390x.deb | 0.7.1+ds | s390x | Debian main |
نیازمندی
| مقدار | نام |
|---|---|
| >= 5.36.0-4 | perl |
| - | perlapi-5.36.0 |
| >= 1:2.080-3+b1 | pdl |
| - | pdlapi-20 |
| >= 2.17 | libc6 |
| - | bioperl |
| - | libwww-perl |
| - | libdbi-perl |
نحوه نصب
نصب پکیج deb libtfbs-perl:
sudo apt-get install libtfbs-perl_0.7.1+ds-2+b2_arm64.deb
فایل ها
| مسیرها |
|---|
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/ConservationProfile.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/DB/FlatFileDir.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/DB/JASPAR.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/DB/JASPAR2.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/DB/JASPAR4.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/DB/JASPAR5.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/DB/JASPAR6.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/DB/JASPAR7.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/DB/LocalTRANSFAC.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/DB/TRANSFAC.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/DB.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/Ext/pwmsearch.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/Matrix/Alignment.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/Matrix/ICM.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/Matrix/PFM.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/Matrix/PWM.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/Matrix/_Alignment.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/Matrix.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/MatrixSet.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/PatternGen/AnnSpec/Motif.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/PatternGen/AnnSpec.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/PatternGen/Elph/Motif.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/PatternGen/Elph.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/PatternGen/Gibbs/Motif.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/PatternGen/Gibbs.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/PatternGen/MEME/Motif.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/PatternGen/MEME.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/PatternGen/Motif/Matrix.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/PatternGen/Motif/Word.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/PatternGen/SimplePFM.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/PatternGen/YMF/Motif.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/PatternGen/YMF.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/PatternGen.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/PatternGenI.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/PatternI.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/README.md |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/Run/ConservationProfileGenerator.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/Site.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/SitePair.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/SitePairSet.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/SiteSet.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/TFFM.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/Tools/SetOperations.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/Word/Consensus.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/Word.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/_Iterator/_MatrixSetIterator.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/_Iterator/_SiteSetIterator.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/TFBS/_Iterator.pm |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/auto/TFBS/Ext/pwmsearch/pwmsearch.bundle |
| ./usr/lib/aarch64-linux-gnu/perl5/5.36/auto/TFBS/Ext/pwmsearch/pwmsearch.so |
| ... and 66 more |