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tree-puzzle-doc_5.3~rc16+dfsg-9_all.deb
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Reconstruction of phylogenetic trees by maximum likelihood (doc)
| ویژگی | مقدار |
|---|---|
| سیستم عامل | Linux |
| توزیع | Debian Bookworm-12 |
| مخزن | Debian main all |
| نام بسته | tree-puzzle-doc |
| نام فایل بسته | tree-puzzle-doc_5.3~rc16+dfsg-9_all.deb |
| نسخه بسته | 5.3~rc16+dfsg |
| انتشار بسته | 9 |
| معماری بسته | all |
| نگهدارنده | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| تاریخ ساخت | - |
| هاست سازنده | - |
| نوع بسته | .deb |
| آدرس صفحه اصلی | http://www.tree-puzzle.de |
| مجوز | - |
| حجم دانلود | 432672 |
| حجم نصب | 1502 |
TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that
implements a fast tree search algorithm, quartet puzzling, that allows
analysis of large data sets and automatically assigns estimations of support
to each internal branch. TREE-PUZZLE also computes pairwise maximum
likelihood distances as well as branch lengths for user specified trees.
Branch lengths can also be calculated under the clock-assumption. In
addition, TREE-PUZZLE offers a novel method, likelihood mapping, to
investigate the support of a hypothesized internal branch without
computing an overall tree and to visualize the phylogenetic content of
a sequence alignment.
.
This is the documentation package for tree-puzzle
نیازمندی
| مقدار | نام |
|---|---|
| - |
نحوه نصب
نصب پکیج deb tree-puzzle-doc:
sudo apt-get install tree-puzzle-doc_5.3~rc16+dfsg-9_all.deb
فایل ها
| مسیرها |
|---|
| ./usr/share/doc/tree-puzzle/examples/EF.3trees |
| ./usr/share/doc/tree-puzzle/examples/EF.phy |
| ./usr/share/doc/tree-puzzle/examples/atp6.a |
| ./usr/share/doc/tree-puzzle/examples/globin.a |
| ./usr/share/doc/tree-puzzle/examples/globin.ctrees |
| ./usr/share/doc/tree-puzzle/examples/globin.trees |
| ./usr/share/doc/tree-puzzle/examples/marswolf.ctrees |
| ./usr/share/doc/tree-puzzle/examples/marswolf.n |
| ./usr/share/doc/tree-puzzle/examples/marswolf.trees |
| ./usr/share/doc/tree-puzzle/examples/primates.b |
| ./usr/share/doc/tree-puzzle/examples/primates.ctrees |
| ./usr/share/doc/tree-puzzle/examples/primates.trees |
| ./usr/share/doc/tree-puzzle/examples/tests/check-cons-pure-prot |
| ./usr/share/doc/tree-puzzle/examples/tests/check-lm-pure-prot |
| ./usr/share/doc/tree-puzzle/examples/tests/check-qp-clock |
| ./usr/share/doc/tree-puzzle/examples/tests/check-qp-hky-clock-nucl |
| ./usr/share/doc/tree-puzzle/examples/tests/check-qp-hky-rhet-clock-nucl |
| ./usr/share/doc/tree-puzzle/examples/tests/check-qp-hky-rhet-nucl |
| ./usr/share/doc/tree-puzzle/examples/tests/check-qp-jtt-prot |
| ./usr/share/doc/tree-puzzle/examples/tests/check-qp-jtt-rhet-clock-prot |
| ./usr/share/doc/tree-puzzle/examples/tests/check-qp-jtt-rhet-prot |
| ./usr/share/doc/tree-puzzle/examples/tests/check-qp-mtrev-prot |
| ./usr/share/doc/tree-puzzle/examples/tests/check-qp-pure-bin |
| ./usr/share/doc/tree-puzzle/examples/tests/check-qp-pure-nucl |
| ./usr/share/doc/tree-puzzle/examples/tests/check-qp-pure-prot |
| ./usr/share/doc/tree-puzzle/examples/tests/check-qp-tn-nucl |
| ./usr/share/doc/tree-puzzle/examples/tests/check-qp-vt-prot |
| ./usr/share/doc/tree-puzzle/examples/tests/check-qp-wag-prot |
| ./usr/share/doc/tree-puzzle/examples/tests/check-ut-pure-prot |
| ./usr/share/doc/tree-puzzle/examples/tests/cons-pure-prot.ctrees |
| ./usr/share/doc/tree-puzzle/examples/tests/cons-pure-prot.ctrees.clean |
| ./usr/share/doc/tree-puzzle/examples/tests/cons-pure-prot.ctrees.dist |
| ./usr/share/doc/tree-puzzle/examples/tests/cons-pure-prot.ctrees.puzzle |
| ./usr/share/doc/tree-puzzle/examples/tests/cons-pure-prot.ctrees.tree |
| ./usr/share/doc/tree-puzzle/examples/tests/cons-pure-prot.param |
| ./usr/share/doc/tree-puzzle/examples/tests/cons-pure-prot.prot |
| ./usr/share/doc/tree-puzzle/examples/tests/cons-pure-prot.prot.out |
| ./usr/share/doc/tree-puzzle/examples/tests/cons-pure-prot.test |
| ./usr/share/doc/tree-puzzle/examples/tests/generate-scripts.sh |
| ./usr/share/doc/tree-puzzle/examples/tests/lm-pure-prot.param |
| ./usr/share/doc/tree-puzzle/examples/tests/lm-pure-prot.prot |
| ./usr/share/doc/tree-puzzle/examples/tests/lm-pure-prot.prot.clean |
| ./usr/share/doc/tree-puzzle/examples/tests/lm-pure-prot.prot.dist |
| ./usr/share/doc/tree-puzzle/examples/tests/lm-pure-prot.prot.eps |
| ./usr/share/doc/tree-puzzle/examples/tests/lm-pure-prot.prot.out |
| ./usr/share/doc/tree-puzzle/examples/tests/lm-pure-prot.prot.puzzle |
| ./usr/share/doc/tree-puzzle/examples/tests/lm-pure-prot.prot.svg |
| ./usr/share/doc/tree-puzzle/examples/tests/lm-pure-prot.test |
| ./usr/share/doc/tree-puzzle/examples/tests/qp-clock.nucl |
| ./usr/share/doc/tree-puzzle/examples/tests/qp-clock.nucl.clean |
| ... and 127 more |