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freud-analysis-2.9.0


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توضیحات

Powerful, efficient trajectory analysis in scientific Python.
ویژگی مقدار
سیستم عامل -
نام فایل freud-analysis-2.9.0
نام freud-analysis
نسخه کتابخانه 2.9.0
نگهدارنده ['freud Developers']
ایمیل نگهدارنده ['freud-developers@umich.edu']
نویسنده Vyas Ramasubramani et al.
ایمیل نویسنده vramasub@umich.edu
آدرس صفحه اصلی https://github.com/glotzerlab/freud
آدرس اینترنتی https://pypi.org/project/freud-analysis/
مجوز -
===== freud ===== |Citing freud| |PyPI| |conda-forge| |ReadTheDocs| |Binder| |GitHub-Stars| .. |Citing freud| image:: https://img.shields.io/badge/cite-freud-informational.svg :target: https://freud.readthedocs.io/en/stable/reference/citing.html .. |PyPI| image:: https://img.shields.io/pypi/v/freud-analysis.svg :target: https://pypi.org/project/freud-analysis/ .. |conda-forge| image:: https://img.shields.io/conda/vn/conda-forge/freud.svg :target: https://anaconda.org/conda-forge/freud .. |ReadTheDocs| image:: https://readthedocs.org/projects/freud/badge/?version=latest :target: https://freud.readthedocs.io/en/latest/?badge=latest .. |Binder| image:: https://mybinder.org/badge_logo.svg :target: https://mybinder.org/v2/gh/glotzerlab/freud-examples/master?filepath=index.ipynb .. |GitHub-Stars| image:: https://img.shields.io/github/stars/glotzerlab/freud.svg?style=social :target: https://github.com/glotzerlab/freud Overview ======== The **freud** Python library provides a simple, flexible, powerful set of tools for analyzing trajectories obtained from molecular dynamics or Monte Carlo simulations. High performance, parallelized C++ is used to compute standard tools such as radial distribution functions, correlation functions, order parameters, and clusters, as well as original analysis methods including potentials of mean force and torque (PMFTs) and local environment matching. The **freud** library supports `many input formats <https://freud.readthedocs.io/en/stable/topics/datainputs.html>`__ and outputs `NumPy arrays <https://numpy.org/>`__, enabling integration with the scientific Python ecosystem for many typical materials science workflows. Resources ========= - `Reference Documentation <https://freud.readthedocs.io/>`__: Examples, tutorials, topic guides, and package Python APIs. - `Installation Guide <https://freud.readthedocs.io/en/stable/gettingstarted/installation.html>`__: Instructions for installing and compiling **freud**. - `freud-users Google Group <https://groups.google.com/d/forum/freud-users>`__: Ask questions to the **freud** user community. - `GitHub repository <https://github.com/glotzerlab/freud>`__: Download the **freud** source code. - `Issue tracker <https://github.com/glotzerlab/freud/issues>`__: Report issues or request features. Related Tools ============= - `HOOMD-blue <https://hoomd-blue.readthedocs.io/>`__: Perform MD / MC simulations that can be analyzed with **freud**. - `signac <https://signac.io/>`__: Manage your workflow with **signac**. Citation ======== When using **freud** to process data for publication, please `use this citation <https://freud.readthedocs.io/en/stable/reference/citing.html>`__. Installation ============ The easiest ways to install **freud** are using pip: .. code:: bash pip install freud-analysis or conda: .. code:: bash conda install -c conda-forge freud **freud** is also available via containers for `Docker <https://hub.docker.com/r/glotzerlab/software>`__ or `Singularity <https://glotzerlab.engin.umich.edu/downloads/glotzerlab>`__. If you need more detailed information or wish to install **freud** from source, please refer to the `Installation Guide <https://freud.readthedocs.io/en/stable/gettingstarted/installation.html>`__ to compile **freud** from source. Examples ======== The **freud** library is called using Python scripts. Many core features are `demonstrated in the freud documentation <https://freud.readthedocs.io/en/stable/examples.html>`_. The examples come in the form of Jupyter notebooks, which can also be downloaded from the `freud examples repository <https://github.com/glotzerlab/freud-examples>`_ or `launched interactively on Binder <https://mybinder.org/v2/gh/glotzerlab/freud-examples/master?filepath=index.ipynb>`_. Below is a sample script that computes the radial distribution function for a simulation run with `HOOMD-blue <https://hoomd-blue.readthedocs.io/>`__ and saved into a `GSD file <https://gsd.readthedocs.io/>`_. .. code:: python import freud import gsd.hoomd # Create a freud compute object (RDF is the canonical example) rdf = freud.density.RDF(bins=50, r_max=5) # Load a GSD trajectory (see docs for other formats) traj = gsd.hoomd.open('trajectory.gsd', 'rb') for frame in traj: rdf.compute(system=frame, reset=False) # Get bin centers, RDF data from attributes r = rdf.bin_centers y = rdf.rdf Support and Contribution ======================== Please visit our repository on `GitHub <https://github.com/glotzerlab/freud>`__ for the library source code. Any issues or bugs may be reported at our `issue tracker <https://github.com/glotzerlab/freud/issues>`__, while questions and discussion can be directed to our `user forum <https://groups.google.com/forum/#!forum/freud-users>`__. All contributions to **freud** are welcomed via pull requests!


نیازمندی

مقدار نام
>=1.14 numpy
>=1.2.1 rowan
>=1.1 scipy


زبان مورد نیاز

مقدار نام
>=3.6 Python


نحوه نصب


نصب پکیج whl freud-analysis-2.9.0:

    pip install freud-analysis-2.9.0.whl


نصب پکیج tar.gz freud-analysis-2.9.0:

    pip install freud-analysis-2.9.0.tar.gz