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ephyviewer-1.6.0
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مشاهده بیشترتوضیحات
Simple viewers for ephys signals, events, video and more
| ویژگی | مقدار |
|---|---|
| سیستم عامل | - |
| نام فایل | ephyviewer-1.6.0 |
| نام | ephyviewer |
| نسخه کتابخانه | 1.6.0 |
| نگهدارنده | [] |
| ایمیل نگهدارنده | [] |
| نویسنده | S.Garcia, Jeffrey Gill |
| ایمیل نویسنده | - |
| آدرس صفحه اصلی | https://github.com/NeuralEnsemble/ephyviewer |
| آدرس اینترنتی | https://pypi.org/project/ephyviewer/ |
| مجوز | MIT |
ephyviewer
==========
*Simple viewers for ephys signals, events, video and more*
:Distributions: |pypi-badge| |anaconda-cloud-badge|
:Source Code: |github-badge| |conda-forge-feedstock-badge|
:Tests Status: |github-actions-badge| |conda-forge-azure-badge| |rtd-status-badge| |coveralls-badge|
Documentation_ | `Release Notes`_ | `Issue Tracker`_
**ephyviewer** is a Python library based on pyqtgraph_ for building custom
viewers for electrophysiological signals, video, events, epochs, spike trains,
data tables, and time-frequency representations of signals. It also provides an
epoch encoder for creating annotations.
|screenshot|
**ephyviewer** can be used at two levels: standalone app and library.
For an example of an application that utilizes **ephyviewer**'s capabilities as
a library, see the neurotic_ app and this paper:
Gill, J. P., Garcia, S., Ting, L. H., Wu, M., & Chiel, H. J. (2020).
*neurotic*: Neuroscience Tool for Interactive Characterization. eNeuro,
7(3). https://doi.org/10.1523/ENEURO.0085-20.2020
Standalone application
----------------------
The standalone app works with file types supported by Neo_'s RawIO interface
(Axograph, Axon, Blackrock, BrainVision, Neuralynx, NeuroExplorer, Plexon,
Spike2, Tdt, etc.; see the documentation for neo.rawio_ for the full list).
Launch it from the console and use the menu to select a data file::
ephyviewer
Alternatively, launch it from the console with a filename (and optionally the
format)::
ephyviewer File_axon_1.abf
ephyviewer File_axon_1.abf -f Axon
Library for designing custom viewers for ephys datasets
-------------------------------------------------------
Build viewers using code like this:
.. code:: python
import ephyviewer
import numpy as np
app = ephyviewer.mkQApp()
#signals
sigs = np.random.rand(100000,16)
sample_rate = 1000.
t_start = 0.
view1 = ephyviewer.TraceViewer.from_numpy(sigs, sample_rate, t_start, 'Signals')
win = ephyviewer.MainViewer(debug=True, show_auto_scale=True)
win.add_view(view1)
win.show()
app.exec_()
Check the docs for more examples_.
.. |pypi-badge| image:: https://img.shields.io/pypi/v/ephyviewer.svg?logo=python&logoColor=white
:target: pypi_
:alt: PyPI
.. |anaconda-cloud-badge| image:: https://img.shields.io/conda/vn/conda-forge/ephyviewer.svg?label=anaconda&logo=anaconda&logoColor=white
:target: anaconda-cloud_
:alt: Anaconda Cloud
.. |github-badge| image:: https://img.shields.io/badge/github-source_code-blue.svg?logo=github&logoColor=white
:target: github_
:alt: GitHub
.. |conda-forge-feedstock-badge| image:: https://img.shields.io/badge/conda--forge-feedstock-blue.svg?logo=conda-forge&logoColor=white
:target: conda-forge-feedstock_
:alt: conda-forge Feedstock
.. |github-actions-badge| image:: https://img.shields.io/github/workflow/status/NeuralEnsemble/ephyviewer/tests/master?label=tests&logo=github&logoColor=white
:target: github-actions_
:alt: Tests Status
.. |conda-forge-azure-badge| image:: https://dev.azure.com/conda-forge/feedstock-builds/_apis/build/status/ephyviewer-feedstock?branchName=master
:target: conda-forge-azure_
:alt: conda-forge Build Status
.. |rtd-status-badge| image:: https://img.shields.io/readthedocs/ephyviewer/latest.svg?logo=read-the-docs&logoColor=white
:target: rtd-status_
:alt: Documentation Status
.. |coveralls-badge| image:: https://coveralls.io/repos/github/NeuralEnsemble/ephyviewer/badge.svg?branch=master
:target: coveralls_
:alt: Coverage status
.. |screenshot| image:: https://raw.githubusercontent.com/NeuralEnsemble/ephyviewer/master/doc/img/mixed_viewer_example.png
:target: https://raw.githubusercontent.com/NeuralEnsemble/ephyviewer/master/doc/img/mixed_viewer_example.png
:alt: Screenshot
.. _anaconda-cloud: https://anaconda.org/conda-forge/ephyviewer
.. _conda-forge-azure: https://dev.azure.com/conda-forge/feedstock-builds/_build/latest?definitionId=8410&branchName=master
.. _conda-forge-feedstock: https://github.com/conda-forge/ephyviewer-feedstock
.. _coveralls: https://coveralls.io/github/NeuralEnsemble/ephyviewer?branch=master
.. _Documentation: https://ephyviewer.readthedocs.io/en/latest
.. _examples: https://ephyviewer.readthedocs.io/en/latest/examples.html
.. _github: https://github.com/NeuralEnsemble/ephyviewer
.. _github-actions: https://github.com/NeuralEnsemble/ephyviewer/actions?query=workflow%3Atests
.. _Issue Tracker: https://github.com/NeuralEnsemble/ephyviewer/issues
.. _Neo: https://neo.readthedocs.io/en/latest
.. _neo.rawio: https://neo.readthedocs.io/en/latest/rawio.html#module-neo.rawio
.. _neurotic: https://neurotic.readthedocs.io/en/latest
.. _pypi: https://pypi.org/project/ephyviewer
.. _pyqtgraph: http://www.pyqtgraph.org
.. _Release Notes: https://ephyviewer.readthedocs.io/en/latest/releasenotes.html
.. _rtd-status: https://readthedocs.org/projects/ephyviewer
نیازمندی
| مقدار | نام |
|---|---|
| >=2.0 | matplotlib |
| - | numpy |
| >=0.10.0 | pyqtgraph |
| - | scipy |
| <2 | sphinx |
| <3.1.0 | jinja2 |
| - | av |
| - | coveralls |
| >=0.10.0 | neo |
| >=0.90.1 | spikeinterface |
| - | pandas |
| - | pytest |
| - | pytest-cov |
نحوه نصب
نصب پکیج whl ephyviewer-1.6.0:
pip install ephyviewer-1.6.0.whl
نصب پکیج tar.gz ephyviewer-1.6.0:
pip install ephyviewer-1.6.0.tar.gz