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embody-file-1.0.9
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مشاهده بیشترتوضیحات
Embody file converter
| ویژگی | مقدار |
|---|---|
| سیستم عامل | - |
| نام فایل | embody-file-1.0.9 |
| نام | embody-file |
| نسخه کتابخانه | 1.0.9 |
| نگهدارنده | [] |
| ایمیل نگهدارنده | [] |
| نویسنده | Aidee Health |
| ایمیل نویسنده | hello@aidee.io |
| آدرس صفحه اصلی | https://github.com/aidee-health/embody-file |
| آدرس اینترنتی | https://pypi.org/project/embody-file/ |
| مجوز | MIT |
# Embody File
[][pypi_]
[][status]
[][python version]
[][license]
[][tests]
[][pre-commit]
[][black]
[pypi_]: https://pypi.org/project/embody-file/
[status]: https://pypi.org/project/embody-file/
[python version]: https://pypi.org/project/embody-file
[tests]: https://github.com/aidee-health/embody-file/actions?workflow=Tests
[pre-commit]: https://github.com/pre-commit/pre-commit
[black]: https://github.com/psf/black
This is a Python based implementation for parsing binary files from the Aidee EmBody device.
## Features
- Converts binary embody files to HDF, CSV, etc
- Integrates with [the EmBody Protocol Codec](https://github.com/aidee-health/embody-protocol-codec) project
- CLI (command line interface)
- Can be used as package in other projects
- Type safe code using [mypy](https://mypy.readthedocs.io/) for type checking
## Requirements
- Python 3.8-3.10
## Installation
You can install _Embody File_ via [pip]:
```console
$ pip install embody-file
```
## Usage
To use the command line, first install this library either globally or using venv:
```console
$ pip install embody-file
```
When this library has been installed, a new command is available, `embody-file` which can be used according to the examples below:
### Get help
To get an updated overview of all command line options:
```bash
embody-file --help
```
### Print version number
```bash
embody-file --version
```
### Convert binary embody file to HDF
To convert to a [HDF 5 (hierarcical data format)](https://en.wikipedia.org/wiki/Hierarchical_Data_Format) format, run the following:
```bash
embody-file testfiles/v5_0_0_test_file.log --output-format HDF
```
The file will be named the same as the input file, with the `.hdf` extension at the end of the file name.
### Convert binary embody file to CSV
To convert to CSV format, run the following:
```bash
embody-file testfiles/v5_0_0_test_file.log --output-format CSV
```
The file will be named the same as the input file, with the `.csv` extension at the end of the file name.
### Print statistics for binary embody file
To print stats without conversion:
```bash
embody-file testfiles/v5_0_0_test_file.log --print-stats
```
### Fail on parse errors
The parser is lenient by default, accepting errors in the input file. If you want to the parsing to fail on any errors, use the `--strict` flag:
```bash
embody-file testfiles/v5_0_0_test_file.log --strict
```
### Plot binary file in graph
To show an ECG/PPG plot graph:
```bash
embody-file testfiles/v5_0_0_test_file.log --plot
```
## Troubleshooting
### I get an error in the middle of the file - how do I start finding the root cause?
To get the best overview, start by running the parser in strict mode and with debug logging, so it stops at the first error:
```bash
embody-file troublesomefile.log --strict --log-level DEBUG
```
This provides positional information per message so it's easier to continue searching for errors.
If this doesn't give us enough information, look at the protocol documentation and start looking and the problematic areas in the input file.
There are several command line tools you can use. On MAC and Linux, one good example is to use the `hexdump` tool:
```bash
hexdump -C -n 70 -s 0 troublesomefile.log
```
Here, `-n 70` is the amount of bytes to print in hex format, and `-s 0` tells hexdump to start at position 0 in the file. Adjust these parameters according to your needs.
Make a note from the parser's error output of what position the first error started from, and based on that:
- Look at the preceding bytes to see whether there were any errors in the previous protocol message
- Look at the bytes from the reported (error) position to see if there are just a few bytes before a new, plausible protocol message starts
## Contributing
Contributions are very welcome.
To learn more, see the [Contributor Guide].
## Issues
If you encounter any problems,
please [file an issue] along with a detailed description.
[file an issue]: https://github.com/aidee-health/embody-file/issues
[pip]: https://pip.pypa.io/
<!-- github-only -->
[license]: https://github.com/aidee-health/embody-file/blob/main/LICENSE
[contributor guide]: https://github.com/aidee-health/embody-file/blob/main/CONTRIBUTING.md
[command-line reference]: https://embody-file.readthedocs.io/en/latest/usage.html
نیازمندی
| مقدار | نام |
|---|---|
| >=1.0.20 | embody-codec |
| >=3.6.2 | matplotlib |
| >=1.5.1 | pandas |
| >=3.7.0 | tables |
زبان مورد نیاز
| مقدار | نام |
|---|---|
| >=3.8,<4.0 | Python |
نحوه نصب
نصب پکیج whl embody-file-1.0.9:
pip install embody-file-1.0.9.whl
نصب پکیج tar.gz embody-file-1.0.9:
pip install embody-file-1.0.9.tar.gz