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eke.study-1.1.18
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Study and protocol information for the EDRN Knowledge Environment
| ویژگی | مقدار |
|---|---|
| سیستم عامل | - |
| نام فایل | eke.study-1.1.18 |
| نام | eke.study |
| نسخه کتابخانه | 1.1.18 |
| نگهدارنده | [] |
| ایمیل نگهدارنده | [] |
| نویسنده | Sean Kelly |
| ایمیل نویسنده | sean.kelly@jpl.nasa.gov |
| آدرس صفحه اصلی | https://github.com/EDRN/eke.study |
| آدرس اینترنتی | https://pypi.org/project/eke.study/ |
| مجوز | ALv2 |
*********
eke.study
*********
This product, ``eke.study``, provides display and RDF ingest of participating
studies and medical protocols that are being executed, will be executed, or
have been executed by the Early Detection Research Network (EDRN_). Studies
and protocols are the major research efforts (and therefore funded entities)
that EDRN researchers pursue, and therefore are a vital component of the EDRN
Knowledge Environment (EKE_). EDRN uses the EKE to make it easy to discover,
share, search for, and retrieve all of EDRN's collective knowledge, including
cancers and other diseases, biomarkers, specimens, participants, staff, and-as
in the case of this product-studies and protocols.
Although intended for the EDRN public portal, it can be installed in any
Plone_ compatible site.
This software is developed by the `EDRN Informatics Center`_ at JPL_,
operated by the California Institute of Technology, for NCI_.
*Note for Developers*: Tests for this package do not work correctly under the
RoadRunner. Use the standard instance test runner instead. (It's not the
fault of the RoadRunner; it has to do with co-dependency of this project with
eke.biomarker).
.. References:
.. _EDRN Informatics Center: http://cancer.jpl.nasa.gov/
.. _EDRN: http://edrn.nci.nih.gov/
.. _EKE: http://cancer.jpl.nasa.gov/documents/applications/knowledge-environment
.. _JPL: http://www.jpl.nasa.gov/
.. _NCI: http://cancer.gov/
.. _Plone: http://plone.org/
Installation
============
Use Buildout_ with the plone.recipe.zope2instance recipe.
• Add ``eke.study`` to the list of eggs to install, e.g.::
[buildout]
...
eggs =
...
eke.study
• Re-run buildout, e.g. with::
% ./bin/buildout
You can skip the ZCML slug if you are going to explicitly include the package
from another package's configure.zcml file.
.. References:
.. _Buildout: http://www.buildout.org/
Changelog
=========
A retrospective of the various releases this component has had, what's been
changed, what's been fixed, and so forth, follows. For issue IDs mentioned
below, see the issue tracker at https://oodt.jpl.nasa.gov/jira/browse/CA
1.1.18 — Plone 4.3.9 Upgrade
----------------------------
• CA-1592
1.1.17 — Let's Get Involved!
----------------------------
• CA-1492 - Need to include involved investigators in Investigator and Protocol pages
1.1.16 — You're Not That Vain
-----------------------------
• CA-1492 - Involved investigator sites not appearing on protocols
• CA-1497 - Duplicates appearing in involved investigator sites
• CA-1498 - Add anchors for biomarkers and science data
• CA-1450 - eke.study ingest should honor http://edrn.nci.nih.gov/rdf/schema.rdf#projectFlag
1.1.15 — Werk Werk
------------------
• CA-1436 - Collaborative Group Workspaces - Separate Projects and Protocols
• CA-1437 - Portal upgrade clears "project" flag
1.1.14 — Bad Data
-----------------
• CA-1430 - Portal cannot ingest protocol #0
1.1.13 — Bug Fixes
------------------
• CA-1300
• CA-1292
• CA-1302
1.1.12 — I Had Some Chicken; Pass Me the FLOSS
----------------------------------------------
• First official release as free/libre/open source software.
1.1.11 — Let's Talk
-------------------
• CA-1229 - Discussion re-enabled after upgrade
1.1.10 — Non-EDRN Protocols and Non-EDRN Protocols
--------------------------------------------------
• CA-1122 - Indicate if Protocol is not an EDRN Protocol
• CA-1148 - Remove description from Protocols it's duplicated in the abstract
1.1.9 — Closing Security Holes
------------------------------
• Made compatible with Plone 4.3.
1.1.8 — More Upgrades
---------------------
• Made compatible with Plone 4.2.4
1.1.7 — Unicode, Again
----------------------
• CA-1005 - Non-US-ASCII characters in protocol title causes catalog rebuild
to fail.
1.1.6 — Upgrades
----------------
Made compatible with Plone 4.1.5 and eea.facetednavigation 4.5. Also,
addressed the following issues:
• CA-965 - Log the upgrade process
• CA-978 - eke.study can't handle RDF with duplicate protocol titles
1.1.5 — Test Support
--------------------
This release includes:
* Depending on just Plone the framework instead of Plone the application.
* Working around null dataset names and investigator names.
1.1.4 — Permanently adds 15 resilience to a shoulder slot item
--------------------------------------------------------------
This release makes functional tests even more resilient.
1.1.3 — Adds 40 Resilience Rating
---------------------------------
This release makes functional tests more resilient.
1.1.2 — Yay Team!
-----------------
This release expands on team projects, adding an index for projects, badging
of projects, and a vocabulary to enumerate them. Also, during RDF ingest, it
connects protocols to collaborative groups.
1.1.1 — Upgrade Cleanup
-----------------------
This release updates the GenericSetup profile to 4, provides upgrade steps to
that profile, and makes the testing and development harness depend on "trunk"
level of other eggs instead of on released versions of those eggs. Also, it
removes in incompatible profile dependency.
1.1.0 — Plone 4
---------------
This release makes eke.study compatible with Plone 4.
1.0.2 — A Mixed Bag
-------------------
This release fixes a couple of issues:
* CA-583 - Add PDFs to Protocols
* CA-620 - Locks appear on biomarkers listed under a protocol incorrectly
(implementation)
1.0.1 — Protocol IDs
--------------------
This release addresses just one tiny little issue:
* CA-659 - Add protocol ID to protocol view
You can find the issue tracker at https://oodt.jpl.nasa.gov/jira/browse/CA
1.0.0 — Prime Time
------------------
This release addresses a number of issues
that make this component (and some of its
selected counterparts) "prime time" for
the operational NCI portal.
This release addresses the following issues:
* CA-528 Automatic periodic ingest of RDF
You can find the issue tracker at https://oodt.jpl.nasa.gov/jira/browse/CA
0.0.3 — Filler Text
-------------------
This release addresses the following issues:
* CA-586 - Show alternative text (if abstract text is empty) on protocol list
page
* CA-604 - Add PI to Protocol List
You can find the issue tracker at https://oodt.jpl.nasa.gov/jira/browse/CA
0.0.2 — To Be Named At Release Time
-----------------------------------
This release addresses the following issues:
* https://oodt.jpl.nasa.gov/jira/browse/CA-551 - Add lock icon to biomarkers
and science data that are "secure" to protocol pages
* https://oodt.jpl.nasa.gov/jira/browse/CA-523 - Create search indexes; in
particular, searches are enabled for abbreviated protocol name, biomarker
names, PI names, collaborative group text, dataset names (courtesy of
updates to ``eke.ecas``), and involved investigator sites.
0.0.1 — HTML Formatting
-----------------------
The following issue is the sole issue addressed in this release:
* http://oodt.jpl.nasa.gov/jira/browse/CA-472 - Protocols and other items seem
to still have encoded ASCII characters in the titles
Release 0.0.0
-------------
Beta release. This release is destined to become the FCS_.
.. References:
.. _FCS: http://en.wikipedia.org/wiki/Development_stage
نحوه نصب
نصب پکیج whl eke.study-1.1.18:
pip install eke.study-1.1.18.whl
نصب پکیج tar.gz eke.study-1.1.18:
pip install eke.study-1.1.18.tar.gz