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echelle-spectra-0.0.2
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مشاهده بیشترتوضیحات
Graphical tool for the extraction and analysis of calibrated spectra from 2D Echelle spectrometer images
| ویژگی | مقدار |
|---|---|
| سیستم عامل | - |
| نام فایل | echelle-spectra-0.0.2 |
| نام | echelle-spectra |
| نسخه کتابخانه | 0.0.2 |
| نگهدارنده | [] |
| ایمیل نگهدارنده | [] |
| نویسنده | - |
| ایمیل نویسنده | Kuzmin Arseniy Aleksandrovich <arseniy.a.kuzmin@gmail.com>, Alexander Liptak <alexadner.liptak.jr@googlemail.com> |
| آدرس صفحه اصلی | - |
| آدرس اینترنتی | https://pypi.org/project/echelle-spectra/ |
| مجوز | MIT License Copyright (c) 2022 Kuzmin Arseniy Aleksandrovich Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. |
<h1 align="center">
<br>
<img src="src/echelle_spectra/resources/graphics/echelle.png" alt="Echelle Spectra Logo" width="200">
<br>
Echelle Spectra
<br>
</h1>
<h4 align="center">Graphical tool for the extraction and analysis of calibrated spectra from 2D Echelle spectrometer images</h4>
<p align="center">
<a href="https://www.python.org/downloads/release/python-395">
<img src="https://img.shields.io/badge/python-3.9-brigtgreen.svg" alt="Python 3.7">
</a>
<a href="https://github.com/queezz/echelle_spectra/blob/master/LICENSE">
<img src="https://img.shields.io/github/license/queezz/echelle_spectra" alt="MIT License">
</a>
<a href="https://github.com/queezz/echelle_spectra/releases/latest">
<img src="https://img.shields.io/github/v/release/queezz/echelle_spectra?include_prereleases&sort=semver"
alt="Latest release">
</a>
<a href="https://github.com/ajulik1997/queezz/echelle_spectra/latest">
<img src="https://img.shields.io/github/release-date-pre/queezz/echelle_spectra" alt="Latest release date">
</a>
<a href="https://github.com/queezz/echelle_spectra/commits">
<img src="https://img.shields.io/github/commits-since/queezz/echelle_spectra/latest" alt="Commits since latest release">
</a>
</p>
<p align="center">
<a href="#quick-start">Quick start</a> •
<a href="#usage">Usage</a> •
<a href="#configuration">Configuration</a> •
<a href="#authors">Authors</a> •
<a href="#license">License</a>
</p>
<p float="left">
<img src="images/gui_image.png" width="500" />
<img src="images/gui_civ.png" width="500" />
</p>
## Quick start
The echelle_spectra module can be installed directly from PyPI via `pip`:
`pip install echelle_spectra --upgrade`
The echelle_spectra app GUI can be invoked directly as a Python module:
`python -m echelle_spectra`
Alternatively, the module can imported and the GUI started from within a Python script:
```python
import echelle_spectra
echelle_spectra.gui.start()
```
If you instead wish to run the tool from its source, clone this repository using `git`, install the project requirements, and execute the `__main__.py` script file as follows:
```shell
git clone https://github.com/queezz/echelle_spectra.git
cd echelle_spectra
pip install -r requirements.txt
python ./src/echelle_spectra/__main__.py
```
## Usage
With the Echelle Spectra GUI open, you will be presented with a set of blank image and spectra plots, as well as a control panel of settings and information on the left.
Firstly, an image file containing data from an Echelle spectrometer needs to be loaded. During the loading process, each frame of the file is converted to a calibrated wavelength-intensity spectrum, and fitting to regions of interest in the spectrum is carried out if requested. Optionally, all spectral and fitting data is saved to disk, which can be imported by another application.
After a file is successfully loaded, the first frame will be graphically displayed in the image viewer, and the corresponding computed spectrum will be shown below it. The control panel on the left can be used to select which frame from the file is being visualised.
Other tabs are also available in the GUI, which contain plots populated by snippets of spectral data in common regions of interest. If fitting was enabled during loading, a convolution of one or more Gaussian curves is plotted that best approximates the emissive intensity in those wavelength regions.
### Data loading
(Info box)
### Calibration
### Data export
### Bulk processing
# GUI for Echelle image processing
To convert Echelle images to spectra two options are avaliable: use this GUI, or import `EchelleImage` class to read, calibrate, and produce a `Spectrum` class, from wicht data could be exported. See examples for [CCD](src/echelle_spectra/examples/testtool-CCD.ipynb) and [CMOS](src/echelle_spectra/examples/testtool-CMOS.ipynb) sensors.
| CCD image | CMOS image |
| -------------------------------- | -------------------------------- |
|  |  |
نیازمندی
| مقدار | نام |
|---|---|
| >=1.0.3 | lmfit |
| >=3.5.2 | matplotlib |
| >=1.23.1 | numpy |
| >=5.15.7 | pyqt5 |
| >=0.12.4 | pyqtgraph |
| >=1.8.1 | scipy |
| >=0.3.0 | sif-parser |
| >=2.0.1 | tomli |
| - | black |
| - | jupyter |
| - | peakutils |
| - | PyQt5-stubs |
| - | twine |
زبان مورد نیاز
| مقدار | نام |
|---|---|
| >=3.8 | Python |
نحوه نصب
نصب پکیج whl echelle-spectra-0.0.2:
pip install echelle-spectra-0.0.2.whl
نصب پکیج tar.gz echelle-spectra-0.0.2:
pip install echelle-spectra-0.0.2.tar.gz