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django-phenotype-ontologies-1.1.0
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مشاهده بیشترتوضیحات
Django app to parse/load phenotype ontologies (OncoTree, HPO, MONDO, etc)
| ویژگی | مقدار |
|---|---|
| سیستم عامل | - |
| نام فایل | django-phenotype-ontologies-1.1.0 |
| نام | django-phenotype-ontologies |
| نسخه کتابخانه | 1.1.0 |
| نگهدارنده | [] |
| ایمیل نگهدارنده | [] |
| نویسنده | Michael A. Gonzalez |
| ایمیل نویسنده | GonzalezMA@email.chop.edu |
| آدرس صفحه اصلی | https://github.com/genomics-geek/django-phenotype-ontologies |
| آدرس اینترنتی | https://pypi.org/project/django-phenotype-ontologies/ |
| مجوز | MIT |
=============================
Django Phenotype Ontologies
=============================
.. image:: https://badge.fury.io/py/django-phenotype-ontologies.svg
:target: https://badge.fury.io/py/django-phenotype-ontologies
.. image:: https://travis-ci.org/chopdgd/django-phenotype-ontologies.svg?branch=develop
:target: https://travis-ci.org/chopdgd/django-phenotype-ontologies
.. image:: https://codecov.io/gh/chopdgd/django-phenotype-ontologies/branch/develop/graph/badge.svg
:target: https://codecov.io/gh/chopdgd/django-phenotype-ontologies
.. image:: https://pyup.io/repos/github/chopdgd/django-phenotype-ontologies/shield.svg
:target: https://pyup.io/repos/github/chopdgd/django-phenotype-ontologies/
:alt: Updates
.. image:: https://pyup.io/repos/github/chopdgd/django-phenotype-ontologies/python-3-shield.svg
:target: https://pyup.io/repos/github/chopdgd/django-phenotype-ontologies/
:alt: Python 3
Django app to parse/load phenotype ontologies (OncoTree, HPO, MONDO, etc)
Documentation
-------------
The full documentation is at https://django-phenotype-ontologies.readthedocs.io.
Quickstart
----------
Install Django Phenotype Ontologies::
pip install django-phenotype-ontologies
Add it to your `INSTALLED_APPS`:
.. code-block:: python
INSTALLED_APPS = (
...
'phenotype_ontologies',
...
)
Add Django Phenotype Ontologies's URL patterns:
.. code-block:: python
from phenotype_ontologies import urls as phenotype_ontologies_urls
urlpatterns = [
...
url(r'^', include(phenotype_ontologies_urls, namespace='phenotype_ontologies')),
...
]
Features
--------
* syncs OBO from MONDO, HPO, and NCIT (OncoTree)
* REST API to interact with models
* GraphQL Nodes to be incorporated to existing GraphQL setups with graphene_django
Running Tests
-------------
Does the code actually work?
::
source <YOURVIRTUALENV>/bin/activate
(myenv) $ pip install tox
(myenv) $ tox
Credits
-------
Tools used in rendering this package:
* Cookiecutter_
* `cookiecutter-djangopackage`_
.. _Cookiecutter: https://github.com/audreyr/cookiecutter
.. _`cookiecutter-djangopackage`: https://github.com/pydanny/cookiecutter-djangopackage
History
-------
0.1.0 (2018-04-10)
++++++++++++++++++
* Models for Phenotype Ontologies
* REST API
* GraphQL Nodes
* Sync methods for PURL of MONDO, HPO, NCIT
0.1.1 (2018-04-10)
++++++++++++++++++
`0.1.1 Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v0.1.0...v0.1.1>`_
* Updated sync to sync_ontology to make it more descriptive
0.1.2 (2018-04-10)
++++++++++++++++++
`0.1.2 Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v0.1.1...v0.1.2>`_
* Added better support for MONDO. A few oddities were causing errors w/ pronto.
0.1.3 (2018-04-18)
++++++++++++++++++
`0.1.3 Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v0.1.2...v0.1.3>`_
* Updated 3rd party libs
0.1.4 (2018-05-16)
++++++++++++++++++
`0.1.4 Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v0.1.3...v0.1.4>`_
* Updated setup.py to read from requirements.txt
0.2.0 (2018-06-01)
++++++++++++++++++
`0.2.0 Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v0.1.4...v0.2.0>`_
* Removed support for GraphQL
0.2.1 (2018-07-27)
++++++++++++++++++
`0.2.1 Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v0.2.0...v0.2.1>`_
* Updated NCIT to be OncoTree - since we are using the onco tree specific ontology
0.2.2 (2018-08-13)
++++++++++++++++++
`0.2.2 Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v0.2.1...v0.2.2>`_
* Updated 3rd party requirements. Some requirements had changed so it was causing failures
0.2.3 (2018-10-29)
++++++++++++++++++
`0.2.3 Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v0.2.2...v0.2.3>`_
* Updated 3rd party requirements.
0.2.4 (2018-11-27)
++++++++++++++++++
`0.2.4 Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v0.2.3...v0.2.4>`_
* Updated 3rd party requirements.
0.2.5 (2019-02-08)
++++++++++++++++++
`0.2.5 Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v0.2.4...v0.2.5>`_
* Updated 3rd party requirements.
* Updated tests to use py.test fixtures
0.2.6 (2019-04-10)
++++++++++++++++++
`0.2.6 Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v0.2.5...v0.2.6>`_
* Updated 3rd party requirements.
* Updated travis to use xenial distribution. Django 2.1 dropped support for SQLite < 3.8.3
0.2.7 (2019-05-31)
++++++++++++++++++
`0.2.7 Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v0.2.6...v0.2.7>`_
* Updated package to use latest cookiecutter template
0.2.8 (2019-07-26)
++++++++++++++++++
`0.2.8 Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v0.2.7...v0.2.8>`_
* Updated 3rd party requirements.
0.2.9 (2019-08-09)
++++++++++++++++++
`0.2.9 Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v0.2.8...v0.2.9>`_
* Updated 3rd party requirements.
0.2.10 (2019-09-09)
+++++++++++++++++++
`0.2.10 Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v0.2.9...v0.2.10>`_
* Updated 3rd party requirements.
1.0.0 (2019-11-01)
++++++++++++++++++
`1.0.0 Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v0.2.10...v1.0.0>`_
* First production release
1.0.1 (2019-11-01)
++++++++++++++++++
`1.0.1 Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v1.0.0...v1.0.1>`_
* pronto > v1.0.0 is not compatible
1.1.0 (2019-11-26)
++++++++++++++++++
`1.1.0 Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v1.0.1...v1.1.0>`_
* Updated dependencies
نیازمندی
| مقدار | نام |
|---|---|
| ==3.10.3 | djangorestframework |
| ==2.2.0 | django-filter |
| ==1.1.0 | django-genomix |
| ==3.2.0 | django-model-utils |
| ==0.12.2 | pronto |
نحوه نصب
نصب پکیج whl django-phenotype-ontologies-1.1.0:
pip install django-phenotype-ontologies-1.1.0.whl
نصب پکیج tar.gz django-phenotype-ontologies-1.1.0:
pip install django-phenotype-ontologies-1.1.0.tar.gz