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توضیحات

A DICOM Implementation for Orthodontic Images

ویژگی	مقدار
سیستم عامل	-
نام فایل	dicom4ortho-0.1.1
نام	dicom4ortho
نسخه کتابخانه	0.1.1
نگهدارنده	[]
ایمیل نگهدارنده	[]
نویسنده	Toni Magni
ایمیل نویسنده	openortho@afm.co
آدرس صفحه اصلی	https://github.com/orgs/open-ortho/
آدرس اینترنتی	https://pypi.org/project/dicom4ortho/
مجوز	-

[![Contributors][contributors-shield]][contributors-url] [![Forks][forks-shield]][forks-url] [![Stargazers][stars-shield]][stars-url] [![Issues][issues-shield]][issues-url] [![MIT License][license-shield]][license-url] [![LinkedIn][linkedin-shield]][linkedin-url]  <a href="https://github.com/open-ortho/dicom4ortho"> <img src="https://raw.githubusercontent.com/open-ortho/dicom4ortho/master/images/open-ortho.png" alt="Logo" width="80" height="80"> </a> <h3 align="center">dicom4ortho 0.1.1</h3> A Python library to create fully defined orthodontic photographs in DICOM. <a href="https://github.com/open-ortho/dicom4ortho/docs">Explore the docs »</a> <a href="https://github.com/open-ortho/dicom4ortho">View Demo</a> · <a href="https://github.com/open-ortho/dicom4ortho/issues">Report Bug</a> · <a href="https://github.com/open-ortho/dicom4ortho/issues">Request Feature</a>  - [About The Project](#about-the-project) - [Built With](#built-with) - [Getting Started](#getting-started) - [Prerequisites](#prerequisites) - [Installation](#installation) - [Validation with dicom3tools](#validation-with-dicom3tools) - [Usage](#usage) - [CSV Image file format](#csv-image-file-format) - [patient_firstname](#patient_firstname) - [patient_lastname](#patient_lastname) - [patient_id](#patient_id) - [patient_sex](#patient_sex) - [patient_birthdate](#patient_birthdate) - [dental_provider_firstname](#dental_provider_firstname) - [dental_provider_lastname](#dental_provider_lastname) - [image_type](#image_type) - [manufacturer](#manufacturer) - [input_image_filename](#input_image_filename) - [study_instance_uid](#study_instance_uid) - [study_description](#study_description) - [series_instance_uid](#series_instance_uid) - [series_description](#series_description) - [Roadmap](#roadmap) - [Contributing](#contributing) - [License](#license) - [Contact](#contact) - [Acknowledgements](#acknowledgements)  ## About The Project The DICOM standard is ready for any developer in the orthodontic community to implement. However, it can be complicated and implementation can be time consuming. We want to create a proof of concept to demonstrate how to properly store orthodontic visible light images (aka photographs) using DICOM, while ensuring all codes (necessary to uniquely identify each image type) are in the proper place. Here's why: * Your time should be focused on creating something amazing. * Being able to import and export DICOM images to and from your orthodontic software will open doors to you and the orthodontic provider. * No one software will serve all orthodontic providers completely. Adding interoperability will allow your product to integrate with others, giving additional value to your solution. You may suggest changes by forking this repo and creating a pull request or opening an issue. Thanks to all the people have have contributed to this project! A list of commonly used resources that we find helpful are listed in the acknowledgements. ### Built With * [pydicom](https://pydicom.github.io/) * [pillow](https://python-pillow.org/) * [dicom3tools](https://www.dclunie.com/dicom3tools.html)  ## Getting Started Like any other Python module, install the module than use it. There is a CLI interface as well. ### Prerequisites - An installation of Python 3+. - optional: [dicom3tools](https://www.dclunie.com/dicom3tools.html) ### Installation Install unsing pipenv by running $ pipenv install dicom4ortho Install using pip by running $ pip install dicom4ortho Only Python 3+ is supported ### Validation with dicom3tools The dicom3tools are used to validate and is only used when the `--validate` option is used. This is just a conveninece wrapper for debugging, and it's installation is not necessary for normal operation. The [dicom3tools](https://www.dclunie.com/dicom3tools.html) can be installed from compiled binaries, which are available for macOS and Windows. Once installed, point `DICOM3TOOLS_PATH` in `defaults.py` to the installation of the dicom3tools.  ## Usage The DICOM images require a lot of information which is not contained in a flat PNG or JPEG image. This information would, in a production environment, usually come from the practice management software, or photo management software. The easiest way to feed this information to `dicom4ortho`'s CLI is using a CSV file. You can find an example CSV file [here](resources/example/input_from.csv) Once installed, if necessary, start the virtual environment: pipenv shell then use dicom4ortho like this: $ dicom4ortho <filename> Where `filename` should be a `.csv` file. Passing a single image file with metadata through arguments is planned for future implementations. ### CSV Image file format The CSV file should be: - with `,` as separator - `UTF-8` encoded Each CSV file should containt the following columns (header) #### patient_firstname Patient first name. First part of DICOM tag `(0010, 0010) Patient's Name`. #### patient_lastname Patient last name. Second part of DICOM tag `(0010, 0010) Patient's Name`. #### patient_id Patient ID. DICOM `(0010, 0020) Patient ID` tag. #### patient_sex Patient's gender. DICOM `(0010, 0040) Patient's Sex` tag. #### patient_birthdate Patient's date of birth in YYYY-MM-DD format. DICOM `(0010, 0030) Patient's Birth Date` tag. #### dental_provider_firstname First name of orthodontic (or dental) provider. First part of DICOM `(0008, 0090) Referring Physician's Name` tag. #### dental_provider_lastname Last name of orthodontic (or dental) provider. Second part of DICOM `(0008, 0090) Referring Physician's Name` tag. #### image_type Image type as defined by ADA SCDI WP-1100. Type dicom4ortho list-image-types for a list of allowed image types. #### manufacturer Manufacturer of Camera. For example, when using an iPhone, use `Apple` here. Overrides input file's EXIF metadata. #### input_image_filename Full path of flat JPG/PNG/TIFF image file to use as input. #### study_instance_uid The unique identifier that distinguishes this study from any other study. For orthodontic purposes, all images taken during the same patient visit, should go under the same study, thus have the same study UID. This is a DICOM UID object and goes into the DICOM `(0020, 000d) Study Instance UID` tag. The exact format is defined in [DICOM Part 5 Data Structures and Encoding - Value Encoding - Value Representation](http://dicom.nema.org/medical/dicom/current/output/html/part05.html#sect_6.2) #### study_description A description for this specific study. For orthodontic purposes, this value could be something like 'Initial Visit'. This is a DICOM UID object and goes into the DICOM `(0008, 1030) Study Description`. Maximum 64 characters are allowed, as defined the [DICOM LO VR](http://dicom.nema.org/medical/dicom/current/output/html/part05.html#sect_6.2) #### series_instance_uid The unique identifier that distinguishes this series from any other series. For orthodontic purposes, all images taken with the same imaging device (for photographs, this would be the camera) and during the same study (hence appointment visit) should be part of the same series, thus have the same series UID. This is a DICOM UID object and goest into the DICOM `(0020, 000e) Series Instance UID` tag. The exact format is defined in [DICOM Part 5 Data Structures and Encoding - Value Encoding - Value Representation](http://dicom.nema.org/medical/dicom/current/output/html/part05.html#sect_6.2) #### series_description A description for this specific series. For orthodontic purposes, this value could be something like 'Orthodontic Intraoral Series'. This is a DICOM UID object and goes into the DICOM `(0008, 103e) Series Description`. Maximum 64 characters are allowed, as defined the [DICOM LO VR](http://dicom.nema.org/medical/dicom/current/output/html/part05.html#sect_6.2)  ## Roadmap See the [open issues](https://github.com/open-ortho/dicom4ortho/issues) for a list of proposed features (and known issues).  ## Contributing Contributions are what make the open source community such an amazing place to be learn, inspire, and create. Any contributions you make are **greatly appreciated**. 1. Fork the Project 2. Create your Feature Branch (`git checkout -b feature/AmazingFeature`) 3. Commit your Changes (`git commit -m 'Add some AmazingFeature'`) 4. Push to the Branch (`git push origin feature/AmazingFeature`) 5. Open a [Pull Request](https://docs.github.com/en/github/collaborating-with-issues-and-pull-requests/creating-a-pull-request)  ## License Distributed under the MIT License. See [LICENSE](LICENSE) for more information.  ## Contact Toni Magni- [@zgypa](https://twitter.com/zgypa) - open-ortho@afm.co Project Link: [https://github.com/open-ortho/dicom4ortho](https://github.com/open-ortho/dicom4ortho)  ## Acknowledgements - [DICOM](https://www.webpagefx.com/tools/emoji-cheat-sheet) - [American Dental Association Standards Committee for Dental Informatics](https://www.ada.org/en/science-research/dental-standards/standards-committee-on-dental-informatics)   [contributors-shield]: https://img.shields.io/github/contributors/open-ortho/dicom4ortho.svg?style=for-the-badge [contributors-url]: https://github.com/open-ortho/dicom4ortho/graphs/contributors [forks-shield]: https://img.shields.io/github/forks/open-ortho/dicom4ortho.svg?style=for-the-badge [forks-url]: https://github.com/open-ortho/dicom4ortho/network/members [stars-shield]: https://img.shields.io/github/stars/open-ortho/dicom4ortho.svg?style=for-the-badge [stars-url]: https://github.com/open-ortho/dicom4ortho/stargazers [issues-shield]: https://img.shields.io/github/issues/open-ortho/dicom4ortho.svg?style=for-the-badge [issues-url]: https://github.com/open-ortho/dicom4ortho/issues [license-shield]: https://img.shields.io/github/license/open-ortho/dicom4ortho.svg?style=for-the-badge [license-url]: https://github.com/open-ortho/dicom4ortho/blob/master/LICENSE [linkedin-shield]: https://img.shields.io/badge/-LinkedIn-black.svg?style=for-the-badge&logo=linkedin&colorB=555 [linkedin-url]: https://linkedin.com/in/open-ortho [product-screenshot]: images/screenshot.png [example-csv-url]: resources/example/input_from.csv

زبان مورد نیاز

مقدار	نام
>=3	Python

نحوه نصب

نصب پکیج whl dicom4ortho-0.1.1:

pip install dicom4ortho-0.1.1.whl

نصب پکیج tar.gz dicom4ortho-0.1.1:

pip install dicom4ortho-0.1.1.tar.gz