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توضیحات

Reproducibly/automatically download data from the DepMap.

ویژگی	مقدار
سیستم عامل	-
نام فایل	depmap-downloader-0.0.2
نام	depmap-downloader
نسخه کتابخانه	0.0.2
نگهدارنده	['Charles Tapley Hoyt']
ایمیل نگهدارنده	['cthoyt@gmail.com']
نویسنده	Charles Tapley Hoyt
ایمیل نویسنده	cthoyt@gmail.com
آدرس صفحه اصلی	https://github.com/cthoyt/depmap_downloader
آدرس اینترنتی	https://pypi.org/project/depmap-downloader/
مجوز	MIT

<h1 align="center"> DepMap Downloader </h1> <p align="center"> <a href="https://github.com/cthoyt/depmap_downloader/actions?query=workflow%3ATests"> <img alt="Tests" src="https://github.com/cthoyt/depmap_downloader/workflows/Tests/badge.svg" /> </a> <a href="https://github.com/cthoyt/cookiecutter-python-package"> <img alt="Cookiecutter template from @cthoyt" src="https://img.shields.io/badge/Cookiecutter-python--package-yellow" /> </a> <a href="https://pypi.org/project/depmap_downloader"> <img alt="PyPI" src="https://img.shields.io/pypi/v/depmap_downloader" /> </a> <a href="https://pypi.org/project/depmap_downloader"> <img alt="PyPI - Python Version" src="https://img.shields.io/pypi/pyversions/depmap_downloader" /> </a> <a href="https://github.com/cthoyt/depmap_downloader/blob/main/LICENSE"> <img alt="PyPI - License" src="https://img.shields.io/pypi/l/depmap_downloader" /> </a> <a href='https://depmap_downloader.readthedocs.io/en/latest/?badge=latest'> <img src='https://readthedocs.org/projects/depmap_downloader/badge/?version=latest' alt='Documentation Status' /> </a> <a href='https://github.com/psf/black'> <img src='https://img.shields.io/badge/code%20style-black-000000.svg' alt='Code style: black' /> </a> </p> Reproducibly/automatically download data from the [Cancer Dependency Map](https://depmap.org). ## 💪 Getting Started The DepMap has a secret API that this package wraps, so you can always get the latest version of some select datasets using [`pystow`](https://github.com/cthoyt/pystow). Get the Achilles gene dependencies: ```python from depmap_downloader import ensure_achilles_gene_dependencies # With a version path = ensure_achilles_gene_dependencies(version="DepMap Public 21Q4") # Get the latest path = ensure_achilles_gene_dependencies() ``` Same for the CRISPR gene dependencies: ```python from depmap_downloader import ensure_crispr_gene_dependencies # With a version path = ensure_crispr_gene_dependencies(version="DepMap Public 21Q4") # Get the latest path = ensure_crispr_gene_dependencies() ``` ## 🚀 Installation The most recent release can be installed from [PyPI](https://pypi.org/project/depmap_downloader/) with: ```bash $ pip install depmap_downloader ``` The most recent code and data can be installed directly from GitHub with: ```bash $ pip install git+https://github.com/cthoyt/depmap_downloader.git ``` To install in development mode, use the following: ```bash $ git clone git+https://github.com/cthoyt/depmap_downloader.git $ cd depmap_downloader $ pip install -e . ``` ## 👐 Contributing Contributions, whether filing an issue, making a pull request, or forking, are appreciated. See [CONTRIBUTING.rst](https://github.com/cthoyt/depmap_downloader/blob/master/CONTRIBUTING.rst) for more information on getting involved. ## 👋 Attribution ### ⚖️ License The code in this package is licensed under the MIT License.    ### 🍪 Cookiecutter This package was created with [@audreyfeldroy](https://github.com/audreyfeldroy)'s [cookiecutter](https://github.com/cookiecutter/cookiecutter) package using [@cthoyt](https://github.com/cthoyt)'s [cookiecutter-snekpack](https://github.com/cthoyt/cookiecutter-snekpack) template. ## 🛠️ For Developers <details> <summary>See developer instrutions</summary> The final section of the README is for if you want to get involved by making a code contribution. ### ❓ Testing After cloning the repository and installing `tox` with `pip install tox`, the unit tests in the `tests/` folder can be run reproducibly with: ```shell $ tox ``` Additionally, these tests are automatically re-run with each commit in a [GitHub Action](https://github.com/cthoyt/depmap_downloader/actions?query=workflow%3ATests) . ### 📦 Making a Release After installing the package in development mode and installing `tox` with `pip install tox`, the commands for making a new release are contained within the `finish` environment in `tox.ini`. Run the following from the shell: ```shell $ tox -e finish ``` This script does the following: 1. Uses BumpVersion to switch the version number in the `setup.cfg` and `src/depmap_downloader/version.py` to not have the `-dev` suffix 2. Packages the code in both a tar archive and a wheel 3. Uploads to PyPI using `twine`. Be sure to have a `.pypirc` file configured to avoid the need for manual input at this step 4. Push to GitHub. You'll need to make a release going with the commit where the version was bumped. 5. Bump the version to the next patch. If you made big changes and want to bump the version by minor, you can use `tox -e bumpversion minor` after. </details>

نیازمندی

مقدار	نام
-	click
-	more-click
-	requests
-	pystow
-	beautifulsoup4
-	sphinx
-	sphinx-rtd-theme
-	sphinx-click
-	sphinx-autodoc-typehints
-	sphinx-automodapi
-	pytest
-	coverage

زبان مورد نیاز

مقدار	نام
>=3.6	Python

نحوه نصب

نصب پکیج whl depmap-downloader-0.0.2:

pip install depmap-downloader-0.0.2.whl

نصب پکیج tar.gz depmap-downloader-0.0.2:

pip install depmap-downloader-0.0.2.tar.gz