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decimate-0.9.6


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توضیحات

A fault-tolerant SLURM scheduler extension
ویژگی مقدار
سیستم عامل -
نام فایل decimate-0.9.6
نام decimate
نسخه کتابخانه 0.9.6
نگهدارنده ['Samuel KORTAS']
ایمیل نگهدارنده ['samuel.kortas@kaust.edu.sa']
نویسنده Samuel KORTAS
ایمیل نویسنده samuel.kortas@kaust.edu.sa
آدرس صفحه اصلی http://decimate.readthedocs.io
آدرس اینترنتی https://pypi.org/project/decimate/
مجوز -
NAME decimate - a fault-tolerant SLURM scheduler extension SYNOPSIS dbatch [ Slurm options ] [ --check <user_script> ] [ --max-retry=<number of restart> ] script [args...] DESCRIPTION Developped by the KAUST Supercomputing Laboratory (KSL), decimate is a SLURM extension written in python designed to handle dependent jobs more easely and efficiently. Decimate transparently adds parameters to SLURM sbatch command to check the correctness of jobs and automatically reschedules jobs found faulty. Using Decimate on Shaheen II, one can submit, run, monitor or terminate a workflow composed of dependent jobs. If asked, thanks to standardized or customized messages, the user will be informed by mail of the progress of its workflow on the system. In case of failure of one part of tne workflow, decimate automatically detects the failure, signals it to the user and launches the misbehaving part after having fixed the job dependency. By default if the same failure happens three consecutive times, decimate cancels the whole workfow removing all the depending jobs from the scheduling. In a next version, decimate will allow the automatic restarting of the workflow once the problem causing its failure has been cured. decimate also allows the user to define his own mail alerts that can be sent at any point of the workflow through a call to a python method. This feature will also be available from bash in a next version. Some customized checking functions can also be designed by the user. Their purpose is to validate if a step of the workflow was succesful or not. It could involved checking for the presence of some result files, grepping some error or success messages in them, computing ratio or checksum... These intermediate results can be easely transmitted to decimate validating or not the correctness of any step. They can also be forwarded by mail to the user where as the workflow is executing. USE At this moment, jobs only need to be submitted through the dbatch command that accepts exactely the same parameters as the original SLURM sbatch command plus the new parameters --check=SCRIPT_FILE where SCRIPT_FILE is a python or shell script to check if results are ok. --max-retry=MAX_RETRY number of time a step can fail and be restarted automatically before failing the whole workflow (3 per default) sslog tails out the decimate logging file attached to the current directory, tracking all the jobs that were launched with dbatch from this directory. sstatus gives the current status of the workflow excecuting in the current directory. Decimate is still in a beta phase and under test with some of our KSL users. More documentations will be provided once the stabilized and fully tested version is made available by the end of June 2018. If interested in testing decimate or contributing, please send a mail to help@hpc.kaust.edu.sa AUTHOR Written by Samuel Kortas (samuel.kortas (at) kaust.edu.sa) REPORTING BUGS Report decimate bugs to help@hpc.kaust.edu.sa COPYRIGHT Copyright (c) 2017, KAUST Supercomputing Laboratory All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. SEE ALSO decimate official documentation pages: <http://http://decimate.readthedocs.io> KAUST Supercomputing Laboratory: <http://hpc.kaust.edu.sa/>


نیازمندی

مقدار نام
- ClusterShell
- pandas
xtr check-manifest;
xtr coverage;


زبان مورد نیاز

مقدار نام
>=2.7, <3 Python


نحوه نصب


نصب پکیج whl decimate-0.9.6:

    pip install decimate-0.9.6.whl


نصب پکیج tar.gz decimate-0.9.6:

    pip install decimate-0.9.6.tar.gz