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de-workflow-0.2.2
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-
| ویژگی | مقدار |
|---|---|
| سیستم عامل | - |
| نام فایل | de-workflow-0.2.2 |
| نام | de-workflow |
| نسخه کتابخانه | 0.2.2 |
| نگهدارنده | [] |
| ایمیل نگهدارنده | [] |
| نویسنده | Nick Anthony |
| ایمیل نویسنده | nanthony007@gmail.com |
| آدرس صفحه اصلی | - |
| آدرس اینترنتی | https://pypi.org/project/de-workflow/ |
| مجوز | - |
# DE Workflow
This is a small wrapper program around the [drug-extraction-cli](https://github.com/UK-IPOP/drug-extraction/tree/main/cli) program.
It is effectively a convenience wrapper for us and our typical use-case.
Benefits over the standard CLI:
- Multi-column support (it _expects_ two columns -- a primary and a secondary)
- Wide form data created automatically
- Wide form data attached to source data ready for analysis
- Automated report generation
- Use of either our/your custom search template _with tags!_
It can generate a nice report using [datapane](https://github.com/datapane/datapane) for some quick eye-ball analysis.
It uses `data/drug_info.json` ([link](data/drug_info.json)) as our template for custom search words **with tags**. This can be extended or edited where you can provide ANY custom search file you want as long as it matches our format. Alternatively you can enable `--live` mode and just use ours 🙂.
- [DE Workflow](#de-workflow)
- [Requirements](#requirements)
- [Installation](#installation)
- [Usage](#usage)
- [Sample Output](#sample-output)
- [Support](#support)
- [Contributing](#contributing)
- [MIT License](#mit-license)
## Requirements
- [pipx](https://pypa.github.io/pipx/)
- [drug-extraction-cli program](../cli/README.md)
## Installation
You can install this program with [pipx](https://pypa.github.io/pipx/):
```bash
pipx install de-workflow
```
You can then easily get help for the only command (execute) like so:
```bash
de-workflow execute --help
```
Which should look something like this:
## Usage
To run this tool all you will need to know is:
- The name of your file
- Your ID column for linking
- Your Target column(s) to search in
You can then run the tool:
```bash
de-workflow execute ../cli/data/records.csv "Case Number" "Primary Cause" "Secondary Cause"
```
This will run the underlying drug extraction program so you **MUST** have the main [CLI](https://github.com/UK-IPOP/drug-extraction/tree/main/cli) tool installed.
There are additional flags for reporting and custom file searching.
`--report/--no-report` identifies whether or not to produce a `datapane` report at the end. Suggested and default value is `--report`.
`--live/no-live` identifies whether or not you want you use our [template](data/drug_info.json).
If you do **NOT** want to use our template, you can disable live (`--no-live`) but you then MUST provide a custom `--search-file` for the program to use. This file should be in `json` format and match the structure of our template so that the tool can work correctly.
## Sample Output
## Support
If you encounter any issues or need support please either contact [@nanthony007](<[github.com/](https://github.com/nanthony007)>) or [open an issue](https://github.com/UK-IPOP/drug-extraction/issues/new).
## Contributing
Contributions are what make the open source community such an amazing place to learn, inspire, and create. Any contributions you make are **greatly appreciated**.
If you have a suggestion that would make this better, please fork the repo and create a pull request. You can also simply open an issue with the tag "enhancement".
Don't forget to give the project a star! Thanks again!
1. Fork the Project
2. Create your Feature Branch (`git checkout -b feature/AmazingFeature`)
3. Commit your Changes (`git commit -m 'Add some AmazingFeature'`)
4. Push to the Branch (`git push origin feature/AmazingFeature`)
5. Open a Pull Request
See [CONTRIBUTING.md](CONTRIBUTING.md) for more details.
## MIT License
[LICENSE](LICENSE)
نیازمندی
| مقدار | نام |
|---|---|
| >=1.4.2,<2.0.0 | pandas |
| >=2.27.1,<3.0.0 | requests |
| >=0.14.0,<0.15.0 | datapane |
| >=5.7.0,<6.0.0 | plotly |
| >=12.3.0,<13.0.0 | rich |
| >=8.1.3,<9.0.0 | click |
زبان مورد نیاز
| مقدار | نام |
|---|---|
| >=3.10,<3.11.0 | Python |
نحوه نصب
نصب پکیج whl de-workflow-0.2.2:
pip install de-workflow-0.2.2.whl
نصب پکیج tar.gz de-workflow-0.2.2:
pip install de-workflow-0.2.2.tar.gz