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datajoint-cleaner-0.1


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توضیحات

A tool for cleaning up external DataJoint stores
ویژگی مقدار
سیستم عامل -
نام فایل datajoint-cleaner-0.1
نام datajoint-cleaner
نسخه کتابخانه 0.1
نگهدارنده []
ایمیل نگهدارنده []
نویسنده -
ایمیل نویسنده Christoph Blessing <chris.blessing@protonmail.com>
آدرس صفحه اصلی -
آدرس اینترنتی https://pypi.org/project/datajoint-cleaner/
مجوز -
# DataJoint-Cleaner ![Test](https://github.com/cblessing24/datajoint-cleaner/workflows/Test/badge.svg) ![Black](https://github.com/cblessing24/datajoint-cleaner/workflows/Black/badge.svg) ![Mypy](https://github.com/cblessing24/datajoint-cleaner/workflows/Mypy/badge.svg) [![codecov](https://codecov.io/gh/cblessing24/datajoint-cleaner/branch/prototype/graph/badge.svg?token=cqR5nrFkeU)](https://codecov.io/gh/cblessing24/datajoint-cleaner) ![Build](https://github.com/cblessing24/datajoint-cleaner/workflows/Build/badge.svg) [![PyPI version](https://badge.fury.io/py/datajoint-cleaner.svg)](https://badge.fury.io/py/datajoint-cleaner) DataJoint-Cleaner is a tool used to clean external [DataJoint](https://datajoint.io/) [stores](https://docs.datajoint.io/python/admin/5-blob-config.html?highlight=external). ## How It Works The user provides information pointing to a particular external table and external store combination. Using this information DataJoint-Cleaner will delete all objects in the external store that have no corresponding entry in the external table, thus freeing storage space. ## Important Considerations The creation of a backup is highly recommended before using DataJoint-Cleaner to avoid a potential loss of data due to an user error or a bug. DataJoint-Cleaner should not be used to clean external stores that are used by multiple database servers or multiple storage protocols (e.g. file & s3). If done so it could potentially delete objects that are still referenced in the database. ## Installation ### Recommended installation method To avoid messing up the system Python environment, the most recommended way to install DataJoint-Cleaner is via [pipx](https://pypi.org/project/pipx/): ```bash pipx install datajoint-cleaner ``` ### Other installation methods Install DataJoint-Cleaner into user site with `pip`: ```bash pip install --user datajoint-cleaner ``` ## Configuration DataJoint-Cleaner will look for a TOML file called `datajoint-cleaner.toml` in the current working directory (by default) to configure itself. The configuration file must have two top-level tables called `database_servers` and `storage_servers` and an array of tables called `cleaning_runs`. ### Specifying Database Servers Database servers are specified in the top-level `database_servers` table. Each key in the table corresponds to a distinct database server. The value of each key must be a table that contains the following keys: `host`, `user` and `password`. The values of the `host`, `user` and `password` keys correspond to the host name of the database server, the name of a user present on said server and the password of said user, respectively. Example: ```toml [database_servers.my_db_server] host = "192.156.3.65" user = "me" password = "mypassword" ``` ### Specifying Storage Servers Storage servers are specified in a sub-table of the `storage_servers` table based on their kind. Currently only MinIO servers are supported which are specified in the `minio` sub table. The keys necessary to specify a MinIO server are `endpoint`, `access_key`, `secret_key` and `secure`. The values of these keys correspond to the endpoint of the MinIO server, your access and private key and whether a secure connection should be established or not, respectively. Example: ```toml [storage_servers.minio.my_minio_server] endpoint = "192.543.5.61" access_key = "my_access_key" secret_key = "my_secret_key" secure = true ``` ### Specifying Cleaning Runs Individual cleaning runs are specified in the top-level array of tables called `cleaning_runs`. Each table in the array corresponds to a distinct cleaning run and must have the following keys: * `database_server`: Name of a database server specified in the `database_servers` table * `schema`: Name of a schema on said database server * `store`: Name of a DataJoint store for which an external table exists in said schema * `storage_server`: A storage server specified in the `storage_servers` table in the `<kind>.<name>` format * `bucket`: Name of a bucket on said MinIO server * `location`: Location of externally stored objects in said bucket Example: ```toml [[cleaning_runs]] database_server = "my_db_server" schema = "my_schema" store = "my_store" storage_server = "minio.my_minio_server" bucket = "my_bucket" location = "my_location" ``` ## Usage The cleaning process can be started like so: ```bash dj-cleaner ``` The command above will execute all cleaning runs defined in the configuration file. The `--config-file` option can be used to pass a custom path to a configuration file to DataJoint-Cleaner: ```bash dj-cleaner --config-file /path/to/config/file ```


نیازمندی

مقدار نام
- minio~=7.0
- pymysql~=1.0
- toml~=0.10


زبان مورد نیاز

مقدار نام
>=3.9 Python


نحوه نصب


نصب پکیج whl datajoint-cleaner-0.1:

    pip install datajoint-cleaner-0.1.whl


نصب پکیج tar.gz datajoint-cleaner-0.1:

    pip install datajoint-cleaner-0.1.tar.gz