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csvspoon-1.0


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توضیحات

A tool to manipulate csv files with headers.
ویژگی مقدار
سیستم عامل -
نام فایل csvspoon-1.0
نام csvspoon
نسخه کتابخانه 1.0
نگهدارنده []
ایمیل نگهدارنده []
نویسنده Jean-Benoist Leger
ایمیل نویسنده jb@leger.tf
آدرس صفحه اصلی https://github.com/jb-leger/csvspoon
آدرس اینترنتی https://pypi.org/project/csvspoon/
مجوز -
# csvspoon: a tool to manipulate csv file with headers Again, again, and again. ## Installing From pypi: ``` pip3 install csvspoon ``` Or developer version: ``` git clone <this repo> cd csvspoon pip3 install -e . ``` ## Enable completion (for bash or other shells using bash-completion) ``` mkdir -p ~/.local/share/bash-completion/completions register-python-argcomplete csvspoon > ~/.local/share/bash-completion/completions/csvspoon ``` ## Python module All methods and functions are accessible in the python module. ## Cli usage ``` usage: csvspoon [-h] {cat,apply,filter,sort,join,aggregate} ... A tool to manipulate csv files with headers. Again, again and again. optional arguments: -h, --help show this help message and exit subcommands: {cat,apply,filter,sort,join,aggregate} cat Concatenate csv files. apply Apply a formula to compute a new column. filter Filter a csv with a formula. sort Sort csv files. join Operate join on csv files aggregate Apply a aggregation formula to compute a new column. ``` ## `csvspoon cat` ``` usage: csvspoon cat [-h] [-d DELIM] [-c INPUTENC] [-o OUTPUT] [-u ODELIM] [-C OUTPUTENC] [-f FORMAT] [input ...] Concatenate csv files. Empty fields added if some columns do not exist in all files This method is completely streamed and no data is stored in memory. positional arguments: input Input file specification. If no input file is provided, stdin is used as first input file, otherwise use explicitly "-" for stdin. Can be a filename (e.g. "file.csv"), a filename followed a semicolon and column names separated by commas (e.g. "file.csv:a_colname,another_colname"). A column can be renamed while reading the file (e.g. "file.csv:a_colname,new_colname=old_colname"). When column names are specified, only these columns are used, with the provided order. optional arguments: -h, --help show this help message and exit -d DELIM, --delim DELIM Input delimiter. (default: ',') -c INPUTENC, --inputenc INPUTENC Input encoding. (default: 'utf8') -o OUTPUT, --output OUTPUT Output file, else output on stdout. -u ODELIM, --output-delim ODELIM Output delimiter. (default: ',') -C OUTPUTENC, --outputenc OUTPUTENC Output encoding. (default: 'utf8') -f FORMAT, --format FORMAT Apply a format on a column on output. The argument must be a column name followed by a colon and a format specifier. e.g. "a_colname:5d" or "a_colname:+07.2f". This option can be specified multiple time to format different columns. Examples: Change delimiter of a csv file: csvspoon cat -d "\t" -u ";" file.csv > result.csv Change delimiter of a csv file with specified output: csvspoon cat -o result.csv -d "\t" -u ";" file.csv Cat two csv files: csvspoon cat file1.csv file2.csv Reformat two columns of a csv files: csvspoon cat -f a_colname:5.1f -f another_colname:04d file.csv Cat one csv file, keeping only a column: csvspoon cat file.csv:a_col Cat two csv files, renaming a column on the second file: csvspoon cat file1.csv file2.csv:new_col=old_col,another_col ``` ## `csvspoon apply` ``` usage: csvspoon apply [-h] [-d DELIM] [-c INPUTENC] [-o OUTPUT] [-u ODELIM] [-C OUTPUTENC] [-f FORMAT] [-b BEFORE] [--np] [--sp] [-t TYPE] [-a COLSPEC FORMULA] [input] Apply a formula to compute a new column. The formula must be a valid python expression evaluated on each row. This method is completely streamed and no data is stored in memory. positional arguments: input Input file specification. If no input file is provided, stdin is used as input file. Can be a filename (e.g. "file.csv"), a filename followed a semicolon and column names separated by commas (e.g. "file.csv:a_colname,another_colname"). A column can be renamed while reading the file (e.g. "file.csv:a_colname,new_colname=old_colname"). When column names are specified, only these columns are used, with the provided order. optional arguments: -h, --help show this help message and exit -d DELIM, --delim DELIM Input delimiter. (default: ',') -c INPUTENC, --inputenc INPUTENC Input encoding. (default: 'utf8') -o OUTPUT, --output OUTPUT Output file, else output on stdout. -u ODELIM, --output-delim ODELIM Output delimiter. (default: ',') -C OUTPUTENC, --outputenc OUTPUTENC Output encoding. (default: 'utf8') -f FORMAT, --format FORMAT Apply a format on a column on output. The argument must be a column name followed by a colon and a format specifier. e.g. "a_colname:5d" or "a_colname:+07.2f". This option can be specified multiple time to format different columns. -b BEFORE, --before BEFORE Run the following code before evaluate the expression on each row. Can be specified multiple times. (e.g. "import math"). --np Shortcut to `--before "import numpy as np"` --sp Shortcut to `--np --before "import scipy as sp"` -t TYPE, --type TYPE Apply type conversion on specified command prior to expression. The argument must be a column name followed by a valid Python type. See "--before" to define non standard type. e.g. "a_column:int" or "a_column:float". This option can be specified multiple time to type different columns. -a COLSPEC FORMULA, --add COLSPEC FORMULA, --add-column COLSPEC FORMULA Append a new column (or update existing one). Take two argument, COLSPEC and FORMULA. COLSPEC is the name of the created column obtained by appling the formula. The column is remplaced if already exists. The COLSPEC can also contains a colon and a format specifier, see "--format" for example. FORMULA must be a valid python expression. For the current row, columns values are accessible as local variable. e.g. "a_colname + other_colname" or "min(a_colname, other_colname)". See "--type" for typing other columns and "--before" for run code before evaluating expression. Can be specified multiple time. Examples: Combine text columns by a formula: csvspoon apply -a name "lastname.upper()+' '+firstname.lower()" file.csv Sum to integer columns: csvspoon apply -t cola:int -t colb:int -a colsum "cola+colb" file.csv Sum to integer columns and format the result: csvspoon apply -t cola:int -t colb:int -a colsum:05d "cola+colb" file.csv Compute complex expression between columns: csvspoon apply \ -b "import math" \ -t x:float \ -t y:float \ -a norm "math.sqrt(x**2+y**2)" \ file.csv Multiple computation can be done reusing newly created columns: csvspoon apply -t x:int -a x2p1 "x**2+1" -a x2p1m1 "x2p1-1" file.csv ``` ## `csvspoon filter` ``` usage: csvspoon filter [-h] [-d DELIM] [-c INPUTENC] [-o OUTPUT] [-u ODELIM] [-C OUTPUTENC] [-f FORMAT] [-b BEFORE] [--np] [--sp] [-t TYPE] [-a FILTER_FORMULA] [input] Evaluate a formula on each row, and keep only rows where the formula is evaluated True. The formula must be a valid python expression evaluated on each row. This method is completely streamed and no data is stored in memory. positional arguments: input Input file specification. If no input file is provided, stdin is used as input file. Can be a filename (e.g. "file.csv"), a filename followed a semicolon and column names separated by commas (e.g. "file.csv:a_colname,another_colname"). A column can be renamed while reading the file (e.g. "file.csv:a_colname,new_colname=old_colname"). When column names are specified, only these columns are used, with the provided order. optional arguments: -h, --help show this help message and exit -d DELIM, --delim DELIM Input delimiter. (default: ',') -c INPUTENC, --inputenc INPUTENC Input encoding. (default: 'utf8') -o OUTPUT, --output OUTPUT Output file, else output on stdout. -u ODELIM, --output-delim ODELIM Output delimiter. (default: ',') -C OUTPUTENC, --outputenc OUTPUTENC Output encoding. (default: 'utf8') -f FORMAT, --format FORMAT Apply a format on a column on output. The argument must be a column name followed by a colon and a format specifier. e.g. "a_colname:5d" or "a_colname:+07.2f". This option can be specified multiple time to format different columns. -b BEFORE, --before BEFORE Run the following code before evaluate the expression on each row. Can be specified multiple times. (e.g. "import math"). --np Shortcut to `--before "import numpy as np"` --sp Shortcut to `--np --before "import scipy as sp"` -t TYPE, --type TYPE Apply type conversion on specified command prior to expression. The argument must be a column name followed by a valid Python type. See "--before" to define non standard type. e.g. "a_column:int" or "a_column:float". This option can be specified multiple time to type different columns. -a FILTER_FORMULA, --add FILTER_FORMULA, --add-filter FILTER_FORMULA FORMULA must be a valid python expression, which is casted to bool(). For the current row, columns values are accessible as local variable. e.g. "a_colname > other_colname" or "a_colname=='fixedvalue'". See "-- type" for typing other columns and "--before" for run code before evaluating filter expression. Can be specified multiple time. Examples: Filter csv file using two columns: csvspoon filter -a "lastname!=firstname" file.csv Chain filters on csv file: csvspoon filter \ -a "lastname.startswith('Doe')" \ -a "firstname.starswith('John')" \ file.csv Filter csv file with float column price: csvspoon filter -t price:float -a "price>12.5" file.csv Filter csv file with complex expression: csvspoon filter \ -b "import math" \ -t x:float \ -t y:float \ -t z:float \ -a "math.sqrt(x**2+y**2)>z" \ file.csv ``` ## `csvspoon sort` ``` usage: csvspoon sort [-h] [-d DELIM] [-c INPUTENC] [-o OUTPUT] [-u ODELIM] [-C OUTPUTENC] [-f FORMAT] [-k KEYS] [-n] [-r] [-R] [input] Sort csv file. Warning: this method need to store in memory all the input csv file. positional arguments: input Input file specification. If no input file is provided, stdin is used as input file. Can be a filename (e.g. "file.csv"), a filename followed a semicolon and column names separated by commas (e.g. "file.csv:a_colname,another_colname"). A column can be renamed while reading the file (e.g. "file.csv:a_colname,new_colname=old_colname"). When column names are specified, only these columns are used, with the provided order. optional arguments: -h, --help show this help message and exit -d DELIM, --delim DELIM Input delimiter. (default: ',') -c INPUTENC, --inputenc INPUTENC Input encoding. (default: 'utf8') -o OUTPUT, --output OUTPUT Output file, else output on stdout. -u ODELIM, --output-delim ODELIM Output delimiter. (default: ',') -C OUTPUTENC, --outputenc OUTPUTENC Output encoding. (default: 'utf8') -f FORMAT, --format FORMAT Apply a format on a column on output. The argument must be a column name followed by a colon and a format specifier. e.g. "a_colname:5d" or "a_colname:+07.2f". This option can be specified multiple time to format different columns. -k KEYS, --key KEYS Column used for sorting. Can be specified multiple time. -n, --numeric-sort Compare according to numerical value. -r, --reverse Reverse the result of comparisons. -R, --random-sort Shuffle. If key specified, shuffle is performed inside lines with the same key. Examples: Sort csv file using column cola: csvspoon sort -k cola file.csv Sort csv file using columns cola and colb: csvspoon sort -k cola -k colb file.csv Sort csv file using numerical mode on column numcol: csvspoon sort -n -k numcol file.csv Shuffle csv file: csvspoon sort -R file.csv ``` ## `csvspoon join` ``` usage: csvspoon join [-h] [-d DELIM] [-c INPUTENC] [-o OUTPUT] [-u ODELIM] [-C OUTPUTENC] [-f FORMAT] [-l] [-r] [-e] input [input ...] Natural join of csv files. Joins are performed from left to right. Warning: this method need to store in memory all csv except the first which is streamed. If neither --left or --right specified, inner join is realized. For complete outer join, use --left and --right together. positional arguments: input Input file specification. If less than two input files are provided, stdin is used as first input file, otherwise use explicitly "-" for stdin. Can be a filename (e.g. "file.csv"), a filename followed a semicolon and column names separated by commas (e.g. "file.csv:a_colname,another_colname"). A column can be renamed while reading the file (e.g. "file.csv:a_colname,new_colname=old_colname"). When column names are specified, only these columns are used, with the provided order. optional arguments: -h, --help show this help message and exit -d DELIM, --delim DELIM Input delimiter. (default: ',') -c INPUTENC, --inputenc INPUTENC Input encoding. (default: 'utf8') -o OUTPUT, --output OUTPUT Output file, else output on stdout. -u ODELIM, --output-delim ODELIM Output delimiter. (default: ',') -C OUTPUTENC, --outputenc OUTPUTENC Output encoding. (default: 'utf8') -f FORMAT, --format FORMAT Apply a format on a column on output. The argument must be a column name followed by a colon and a format specifier. e.g. "a_colname:5d" or "a_colname:+07.2f". This option can be specified multiple time to format different columns. -l, --left Perform left join. If more than two files are provided, each join in a left join. Can be used with `-r` to obtain a outer join. -r, --right Perform right join. If more than two files are provided, each join in a right join. Can be used with `-l` to obtain a outer join. -e, --empty Indicate than empty field have to be considered as a value. Examples: Operate NATURAL JOIN on two csv files: csvspoon join file1.csv file2.csv Operate two NATURAL JOIN on three csv files: csvspoon join file1.csv file2.csv file3.csv Operate LEFT JOIN on two csv files csvspoon join -l file1.csv file2.csv Operate RIGHT JOIN on two csv files csvspoon join -r file1.csv file2.csv Operate OUTER JOIN on two csv files csvspoon join -lr file1.csv file2.csv ``` ## `csvspoon aggregate` ``` usage: csvspoon aggregate [-h] [-d DELIM] [-c INPUTENC] [-o OUTPUT] [-u ODELIM] [-C OUTPUTENC] [-f FORMAT] [-b BEFORE] [--np] [--sp] [-t TYPE] [-a COLSPEC FORMULA] [-k KEYS] [input] Apply a formula to compute a new column. The formula must be a valid python expression evaluated for each groupped row. Only aggregation or column with non ambiguous values are keeped. Warning: this method need to store in memory all the input csv file. positional arguments: input Input file specification. If no input file is provided, stdin is used as input file. Can be a filename (e.g. "file.csv"), a filename followed a semicolon and column names separated by commas (e.g. "file.csv:a_colname,another_colname"). A column can be renamed while reading the file (e.g. "file.csv:a_colname,new_colname=old_colname"). When column names are specified, only these columns are used, with the provided order. optional arguments: -h, --help show this help message and exit -d DELIM, --delim DELIM Input delimiter. (default: ',') -c INPUTENC, --inputenc INPUTENC Input encoding. (default: 'utf8') -o OUTPUT, --output OUTPUT Output file, else output on stdout. -u ODELIM, --output-delim ODELIM Output delimiter. (default: ',') -C OUTPUTENC, --outputenc OUTPUTENC Output encoding. (default: 'utf8') -f FORMAT, --format FORMAT Apply a format on a column on output. The argument must be a column name followed by a colon and a format specifier. e.g. "a_colname:5d" or "a_colname:+07.2f". This option can be specified multiple time to format different columns. -b BEFORE, --before BEFORE Run the following code before evaluate the expression on each row. Can be specified multiple times. (e.g. "import math"). --np Shortcut to `--before "import numpy as np"` --sp Shortcut to `--np --before "import scipy as sp"` -t TYPE, --type TYPE Apply type conversion on specified command prior to expression. The argument must be a column name followed by a valid Python type. See "--before" to define non standard type. e.g. "a_column:int" or "a_column:float". This option can be specified multiple time to type different columns. -a COLSPEC FORMULA, --add COLSPEC FORMULA, --add-aggregation COLSPEC FORMULA Append a new colon by aggregation of values. Take two argument, COLSPEC and FORMULA. COLSPEC is the name of the created column obtained the aggregation. The COLSPEC can also contains a colon and a format specifier, see "--format" for example. FORMULA must be a valid python expression. For each column, list of values to aggregate are accessible as local variable. The formula should return a single value. e.g. "sum(a_colname) + sum(other_colname)". See "--type" for typing other columns and "--before" for run code before evaluating expression. Can be specified multiple time. -k KEYS, --key KEYS Column used groupping the aggregate. Can be specified multiple time. Similar to "GROUP BY" in SQL. Examples: Keeping unique lines, one line per group: csvspoon aggregate \ -k group \ file.csv Computing the total mean grade: csvspoon aggregate \ --np \ -t grade:float \ -a meangrade "np.mean(grade)" \ file.csv Computing the total mean grade specifing a format: csvspoon aggregate \ --np \ -t grade:float \ -a meangrade:.2f "np.mean(grade)" \ file.csv Computing the mean grade by group: csvspoon aggregate \ --np \ -t grade:float \ -a meangrade "np.mean(grade)" \ -k group \ file.csv Computing the mean grade, median, standard deviation by group: csvspoon aggregate \ --np \ -t grade:float \ -a meangrade "np.mean(grade)" \ -a mediangrade "np.median(grade)" \ -a stdgrade "np.std(grade)" \ -k group \ file.csv ``` ## Cli example ### csvspoon cat: Concatenate CSV files - Change delimiter of a csv file: ``` csvspoon cat -d "\t" -u ";" file.csv > result.csv ``` - Change delimiter of a csv file with specified output: ``` csvspoon cat -o result.csv -d "\t" -u ";" file.csv ``` - Cat two csv files: ``` csvspoon cat file1.csv file2.csv ``` - Reformat two columns of a csv files: ``` csvspoon cat -f a_colname:5.1f -f another_colname:04d file.csv ``` - Cat one csv file, keeping only a column: ``` csvspoon cat file.csv:a_col ``` - Cat two csv files, renaming a column on the second file: ``` csvspoon cat file1.csv file2.csv:new_col=old_col,another_col ``` ### csvspoon apply: Apply functions to add columns - Combine text columns by a formula: ``` csvspoon apply -a name "lastname.upper()+' '+firstname.lower()" file.csv ``` - Sum to integer columns: ``` csvspoon apply -t cola:int -t colb:int -a colsum "cola+colb" file.csv ``` - Sum to integer columns and format the result: ``` csvspoon apply -t cola:int -t colb:int -a colsum:05d "cola+colb" file.csv ``` - Compute complex expression between columns: ``` csvspoon apply \ -b "import math" \ -t x:float \ -t y:float \ -a norm "math.sqrt(x**2+y**2)" \ file.csv ``` - Multiple computation can be done reusing newly created columns: ``` csvspoon apply -t x:int -a x2p1 "x**2+1" -a x2p1m1 "x2p1-1" file.csv ``` ### csvspoon sort: Sort CSV file - Sort csv file using column cola: ``` csvspoon sort -k cola file.csv ``` - Sort csv file using columns cola and colb: ``` csvspoon sort -k cola -k colb file.csv ``` - Sort csv file using numerical mode on column numcol: ``` csvspoon sort -n -k numcol file.csv ``` - Shuffle csv file: ``` csvspoon sort -R file.csv ``` ### csvspoon filter: Filter CSV from given conditions - Filter csv file using two columns: ``` csvspoon filter -a "lastname!=firstname" file.csv ``` - Chain filters on csv file: ``` csvspoon filter \ -a "lastname.startswith('Doe')" \ -a "firstname.starswith('John')" \ file.csv ``` - Filter csv file with float column price: ``` csvspoon filter -t price:float -a "price>12.5" file.csv ``` - Filter csv file with complex expression: ``` csvspoon filter \ -b "import math" \ -t x:float \ -t y:float \ -t z:float \ -a "math.sqrt(x**2+y**2)>z" \ file.csv ``` ### csvspoon join: Join CSV files - Operate NATURAL JOIN on two csv files: ``` csvspoon join file1.csv file2.csv ``` - Operate two NATURAL JOIN on three csv files: ``` csvspoon join file1.csv file2.csv file3.csv ``` - Operate LEFT JOIN on two csv files ``` csvspoon join -l file1.csv file2.csv ``` - Operate RIGHT JOIN on two csv files ``` csvspoon join -r file1.csv file2.csv ``` - Operate OUTER JOIN on two csv files ``` csvspoon join -lr file1.csv file2.csv ``` ### csvspoon aggregate: Compute aggregation on CSV file - Keeping unique lines, one line per group: ``` csvspoon aggregate \ -k group \ file.csv ``` - Computing the total mean grade: ``` csvspoon aggregate \ --np \ -t grade:float \ -a meangrade "np.mean(grade)" \ file.csv ``` - Computing the total mean grade specifing a format: ``` csvspoon aggregate \ --np \ -t grade:float \ -a meangrade:.2f "np.mean(grade)" \ file.csv ``` - Computing the mean grade by group: ``` csvspoon aggregate \ --np \ -t grade:float \ -a meangrade "np.mean(grade)" \ -k group \ file.csv ``` - Computing the mean grade, median, standard deviation by group: ``` csvspoon aggregate \ --np \ -t grade:float \ -a meangrade "np.mean(grade)" \ -a mediangrade "np.median(grade)" \ -a stdgrade "np.std(grade)" \ -k group \ file.csv ```


نیازمندی

مقدار نام
- argparse
- argcomplete
- pytest
- numpy


زبان مورد نیاز

مقدار نام
>=3.5 Python


نحوه نصب


نصب پکیج whl csvspoon-1.0:

    pip install csvspoon-1.0.whl


نصب پکیج tar.gz csvspoon-1.0:

    pip install csvspoon-1.0.tar.gz