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cpg-hail-0.2.90


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توضیحات

Scalable library for exploring and analyzing genomic data.
ویژگی مقدار
سیستم عامل -
نام فایل cpg-hail-0.2.90
نام cpg-hail
نسخه کتابخانه 0.2.90
نگهدارنده []
ایمیل نگهدارنده []
نویسنده Hail Team
ایمیل نویسنده hail@broadinstitute.org
آدرس صفحه اصلی https://hail.is
آدرس اینترنتی https://pypi.org/project/cpg-hail/
مجوز -
# Hail [![Zulip](https://img.shields.io/badge/zulip-join_chat-brightgreen.svg)](https://hail.zulipchat.com?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge) [Hail](https://hail.is) is an open-source, general-purpose, Python-based data analysis tool with additional data types and methods for working with genomic data. Hail is built to scale and has first-class support for multi-dimensional structured data, like the genomic data in a genome-wide association study (GWAS). Hail is exposed as a Python library, using primitives for distributed queries and linear algebra implemented in Scala, [Spark](https://spark.apache.org/docs/latest/index.html), and increasingly C++. See the [documentation](https://hail.is/docs/0.2/) for more info on using Hail. ### Community Hail has been widely adopted in academia and industry, including as the analysis platform for the [genome aggregation database](https://gnomad.broadinstitute.org) and [UK Biobank rapid GWAS](https://www.nealelab.is/uk-biobank). Learn more about [Hail-powered science](https://hail.is/references.html). ### Contribute If you'd like to discuss or contribute to the development of methods or infrastructure, please: - see the [For Software Developers](https://hail.is/docs/0.2/getting_started_developing.html) section of the installation guide for info on compiling Hail - chat with us about development in our [Zulip chatroom](https://hail.zulipchat.com) - visit the [Development Forum](https://dev.hail.is) for longer-form discussions <!--- - read [this post]() (coming soon!) for tips on submitting a successful Pull Request to our repository ---> Hail uses a continuous deployment approach to software development, which means we frequently add new features. We update users about changes to Hail via the [Discussion Forum](https://discuss.hail.is). We recommend creating an account on the Discussion Forum so that you can subscribe to these updates as well. ### Maintainer Hail is maintained by a team in the [Neale lab](https://nealelab.is/) at the [Stanley Center for Psychiatric Research](https://www.broadinstitute.org/stanley) of the [Broad Institute of MIT and Harvard](https://www.broadinstitute.org) and the [Analytic and Translational Genetics Unit](https://www.atgu.mgh.harvard.edu/) of [Massachusetts General Hospital](https://www.massgeneral.org/). Contact the Hail team at <code><a href="mailto:hail@broadinstitute.org">hail@broadinstitute.org</a></code>. ### Citing Hail If you use Hail for published work, please cite the software. You can get a citation for the version of Hail you installed by executing: ```python import hail as hl print(hl.citation()) ``` Which will look like: ``` Hail Team. Hail 0.2.13-81ab564db2b4. https://github.com/hail-is/hail/releases/tag/0.2.13. ``` ##### Acknowledgements The Hail team has several sources of funding at the Broad Institute: - The Stanley Center for Psychiatric Research, which together with Neale Lab has provided an incredibly supportive and stimulating home. - Principal Investigators Benjamin Neale and Daniel MacArthur, whose scientific leadership has been essential for solving the right problems. - Jeremy Wertheimer, whose strategic advice and generous philanthropy have been essential for growing the impact of Hail. We are grateful for generous support from: - The National Institute of Diabetes and Digestive and Kidney Diseases - The National Institute of Mental Health - The National Human Genome Research Institute - The Chan Zuckerberg Initiative We would like to thank <a href="https://zulipchat.com/">Zulip</a> for supporting open-source by providing free hosting, and YourKit, LLC for generously providing free licenses for <a href="https://www.yourkit.com/java/profiler/">YourKit Java Profiler</a> for open-source development. <img src="https://www.yourkit.com/images/yklogo.png" align="right" />


نیازمندی

مقدار نام
==3.8.1 aiohttp
<2.8,>=2.7 aiohttp-session
<0.3,>=0.2.4 asyncinit
<1.12,>=1.10 avro
==1.6.0 azure-identity
==12.8.1 azure-storage-blob
<2.0,>1.3 bokeh
<2.0,>=1.17 boto3
<2.0,>=1.20 botocore
<5 decorator
<1.3,>=1.2.10 Deprecated
<0.4,>=0.3.1.1 dill
==2021.* gcsfs
==1.27.0 google-auth
==1.25.* google-cloud-storage
==1.0.0 humanize
==0.9 hurry.filesize
<1.1,>=0.6 janus
==1.5.4 nest-asyncio
<2 numpy
==3.6.4 orjson
<1.5.0,>=1.3.0 pandas
<0.9 parsimonious
<5.6,>=5.5.0 plotly
- PyJWT
<3.2.0,>=3.1.1 pyspark
==2.0.2 python-json-logger
==2.25.1 requests
<1.8,>1.2 scipy
==2.4.0 sortedcontainers
==0.8.9 tabulate
==4.* tqdm
==0.16.0 uvloop


زبان مورد نیاز

مقدار نام
>=3.7 Python


نحوه نصب


نصب پکیج whl cpg-hail-0.2.90:

    pip install cpg-hail-0.2.90.whl


نصب پکیج tar.gz cpg-hail-0.2.90:

    pip install cpg-hail-0.2.90.tar.gz