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covid19-detection-0.3.6


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توضیحات

Detection of COVID-19 from Chest X-Ray Images
ویژگی مقدار
سیستم عامل -
نام فایل covid19-detection-0.3.6
نام covid19-detection
نسخه کتابخانه 0.3.6
نگهدارنده []
ایمیل نگهدارنده []
نویسنده Franco Ruggeri, Fredrik Danielsson, Muhammad Tousif Zaman, Milan Jolić
ایمیل نویسنده fruggeri@kth.se, fdaniels@kth.se, mtzaman@kth.se, jolic@kth.se
آدرس صفحه اصلی https://github.com/franco-ruggeri/dd2424-covid19-detection
آدرس اینترنتی https://pypi.org/project/covid19-detection/
مجوز GPL
# Explainable Detection of COVID-19 from Chest X-Ray Images This project is part of the course DD2424 Deep Learning in Data Science at KTH. The goal is to train a classifier for COVID-19 detection from chest X-ray (CXR) images and boost it with explainability. More information can be found in the [report](https://github.com/franco-ruggeri/dd2424-covid19-detection/blob/master/docs/report.pdf). Also check out our [presentation](https://www.youtube.com/watch?v=c1TNhvAmddE&feature=youtu.be). This package provides: - An [application](#2-application) with a graphical user interface (GUI). This application can be used to make predictions on your images using trained models. - A [suite of tools](#2-command-line-suite) with a command-line interface (CLI). These tools can be used to train and test new models. - Several modules with a Keras-like API. These modules can be used in Python code. # 1. Setup The recommended installation is the following: ``` wget https://raw.githubusercontent.com/franco-ruggeri/dd2424-covid19-detection/master/scripts/install.sh -O install.sh bash -i install.sh ``` Following the prompt, you can get a ready-to-use installation that uses the [best models we trained](https://drive.google.com/drive/folders/1x7_xh1xNcuvT8j29y7pTyk_3nrFHNZd2?usp=sharing). The package is distributed on [PyPi](https://pypi.org/), so can be installed also with: ``` pip install covid19-detection ``` However, in this case you have to provide the trained models to the application. You can decide either to download the [best models we trained](https://drive.google.com/drive/folders/1x7_xh1xNcuvT8j29y7pTyk_3nrFHNZd2?usp=sharing) or to train your own models with the [command-line tools](3-command-line-suite). ## 2. Application If you have done the recommended installation, you can launch the application by searching it among the applications. Otherwise, you can launch it from the terminal: ``` covid19-detector ``` ## 3. Command-line suite The command-line suite is available under the *covid19-detection* command. It provides several subcommands. The list can be retrieved with: ``` covid19-detection -h ``` More information about each subcommand can be obtained with: ``` covid19-detection <subcommand> -h ``` ## 4. Package You can import the package in your Python code with: ``` import covid19 ``` The covid19 package is composed of the following sub-packages: - covid19.datasets: contains utilities for generating COVIDx, HAM10000 and for building an input pipeline with tf.data. - covid19.models: contains ResNet50 and COVID-Net, two deep convolutional neural networks. - covid19.explainers: contains Grad-CAM and IG, two explainable AI methods, with some utilities for plotting the explanations. - covid19.layers: contains layers used by models in covid19.models. - covid19.metrics: contains utilities for computing and plotting metrics. - covid19.gui: contains graphical user interface implemented with [Qt](https://www.qt.io/). - covid19.cli: contains command-line interface. Each subpackage provides interesting modules. For example, you can create a COVID-Net as follows: ``` from covid19.models import COVIDNet model = COVIDNet(n_classes=3) ``` For more information about each class, see the comments.


نیازمندی

مقدار نام
~=2.3.0 tensorflow
~=0.11.2 tensorflow-addons
~=4.4.0.42 opencv-python
~=1.18.5 numpy
~=1.1.1 pandas
~=2.0.0 pydicom
~=4.48.2 tqdm
~=3.3.1 matplotlib
~=0.0 sklearn
~=0.23.2 scikit-learn
~=0.10.1 seaborn
~=1.2.0 xlrd
~=1.4.1 scipy
~=6.1.0 pyside6


نحوه نصب


نصب پکیج whl covid19-detection-0.3.6:

    pip install covid19-detection-0.3.6.whl


نصب پکیج tar.gz covid19-detection-0.3.6:

    pip install covid19-detection-0.3.6.tar.gz