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توضیحات

Manages data storage for CKAN/DCOR (import, symlink, etc.)

ویژگی	مقدار
سیستم عامل	-
نام فایل	ckanext-dcor-depot-0.9.9
نام	ckanext-dcor-depot
نسخه کتابخانه	0.9.9
نگهدارنده	[]
ایمیل نگهدارنده	[]
نویسنده	Paul Müller
ایمیل نویسنده	dev@craban.de
آدرس صفحه اصلی	https://github.com/DCOR-dev/ckanext-dcor_depot
آدرس اینترنتی	https://pypi.org/project/ckanext-dcor-depot/
مجوز	AGPLv3+

ckanext-dcor_depot ================== |PyPI Version| |Build Status| |Coverage Status| This plugin manages how data are stored in DCOR. There are two types of files in DCOR: 1. Resources uploaded by users, imported from figshare, or imported from a data archive 2. Ancillary files that are generated upon resource creation, such as condensed DC data, preview images (see `ckanext-dc_view <https://github.com/DCOR-dev/ckanext-dc_view>`_). This plugin implements: - Data storage management. All resources uploaded by a user are moved to ``/data/users-HOSTNAME/USERNAME-ORGNAME/PK/ID/PKGNAME_RESID_RESNAME`` and symlinks are created in ``/data/ckan-HOSTNAME/resources/RES/OUR/CEID``. CKAN itself will not notice this. The idea is to have a filesystem overview about the datasets of each user. - Import datasets from figshare. Existing datasets from figshare are downloaded to the ``/data/depots/figshare`` directory and, upon resource creation, symlinked there from ``/data/ckan-HOSTNAME/resources/RES/OUR/CEID`` (Note that this is an exemption of the data storage management described above). When running the following command, the "figshare-import" organization is created and the datasets listed in ``figshare_dois.txt`` are added to CKAN: :: ckan import-figshare - Populate an internal depot from RT-DC data stored in tar archives. This is part of an effort to have automated imports of RT-DC data from other sources. The idea is to move experimental data to the DCOR server in tar archives and DCOR can then populate the internal depot with it. The location of the internal depot is ``/data/depots/internal/`` and it follows a very specific directory structure ``201X/2019-08/20/2019-08-20_1126_c083de*`` where the path is generated from the acquisition date, time, and part of the hash (``c083de``) of the original data file. According to this scheme, all files with the same path stem belong to one dataset: - ``2019-08-20_1126_c083de.sha256sums`` a file containing SHA256 sums - ``2019-08-20_1126_c083de_v1.rtdc`` the actual measurement - ``2019-08-20_1126_c083de_v1_condensed.rtdc`` the condensed dataset - ``2019-08-20_1126_c083de_ad1_m001_bg.png`` an ancillary image - ``2019-08-20_1126_c083de_ad2_m002_bg.png`` another ancillary image - ... :: ckan depotize-archive - Import datasets from the internal depot. The previous command ``depotize-archive`` just populates the depot directory structure. To make the datasets available in CKAN, this step must be performed: :: ckan import-internal - Upgrade datasets from the internal depot. If you find issues or have to add new versions of an .rtdc resource, simply create the `_v2.rtdc` files and run this command: :: ckan upgrade-internal - CLI for symlinking datasets that have failed to symlink before: :: ckan run-jobs-dcor-depot - CLI for appending a resource to a dataset :: ckan append-resource Please make sure that the necessary file permissions are given in ``/data``. Installation ------------ :: pip install ckanext-dcor_depot Add this extension to the plugins and defaul_views in ckan.ini: :: ckan.plugins = [...] dcor_depot ckan.storage_path=/data/ckan-HOSTNAME ckanext.dcor_depot.depots_path=/data/depots ckanext.dcor_depot.users_depot_name=users-HOSTNAME This plugin stores resources to `/data`: :: mkdir -p /data/depots/users-$(hostname) chown -R www-data /data/depots/users-$(hostname) Testing ------- If CKAN/DCOR is installed and setup for testing, this extension can be tested with pytest: :: pytest ckanext Testing can also be done via vagrant in a virtualmachine using the `dcor-test <https://app.vagrantup.com/paulmueller/boxes/dcor-test/>` image. Make sure that `vagrant` and `virtualbox` are installed and run the following commands in the root of this repository: :: # Setup virtual machine using `Vagrantfile` vagrant up # Run the tests vagrant ssh -- sudo bash /testing/vagrant-run-tests.sh .. |PyPI Version| image:: https://img.shields.io/pypi/v/ckanext.dcor_depot.svg :target: https://pypi.python.org/pypi/ckanext.dcor_depot .. |Build Status| image:: https://img.shields.io/github/workflow/status/DCOR-dev/ckanext-dcor_depot/Checks :target: https://github.com/DCOR-dev/ckanext-dcor_depot/actions?query=workflow%3AChecks .. |Coverage Status| image:: https://img.shields.io/codecov/c/github/DCOR-dev/ckanext-dcor_depot :target: https://codecov.io/gh/DCOR-dev/ckanext-dcor_depot

نیازمندی

مقدار	نام
-	click
>=0.33.2	dclab
>=0.3.0	dcor-shared
-	h5py
==2019.8.11	html2text
-	numpy
-	requests

نحوه نصب

نصب پکیج whl ckanext-dcor-depot-0.9.9:

pip install ckanext-dcor-depot-0.9.9.whl

نصب پکیج tar.gz ckanext-dcor-depot-0.9.9:

pip install ckanext-dcor-depot-0.9.9.tar.gz