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cellml.recipe.api-0.8
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مشاهده بیشترتوضیحات
Recipe to call CMake to build CellML API and Python bindings
| ویژگی | مقدار |
|---|---|
| سیستم عامل | - |
| نام فایل | cellml.recipe.api-0.8 |
| نام | cellml.recipe.api |
| نسخه کتابخانه | 0.8 |
| نگهدارنده | [] |
| ایمیل نگهدارنده | [] |
| نویسنده | Tommy Yu |
| ایمیل نویسنده | tommy.yu@auckland.ac.nz |
| آدرس صفحه اصلی | http://www.cellml.org/tools/api/ |
| آدرس اینترنتی | https://pypi.org/project/cellml.recipe.api/ |
| مجوز | GPL/LGPL/MPL |
Overview
========
This is the recipe that will build the CellML API Python bindings with
all options enabled by default. Currently, there are some limitations,
such as all dependencies required to build the CellML API must be
installed before this recipe can be used, and I don't think this will
work under Windows at the moment.
Supported options
=================
The recipe supports the following options:
api-version
CellML API version to build. Valid versions any versions that build
via CMake and has Python bindings (>1.10), and must be present in
the list of valid versions.
cmake-generator
The generator to use. Only the default option ``Unix Makefiles`` is
supported, as this recipe is built on top of ``zc.recipe.cmmi``
which will make use of ``make`` and ``make install``.
check-build
Whether to check build time dependencies. Default is off because it
didn't detect GSL libraries even though it was installed for me.
Same as passing ``-DCHECK_BUILD:BOOL=OFF`` to ``cmake``.
Other supported options:
- enable-examples
- enable-annotools
- enable-ccgs
- enable-celeds
- enable-celeds-exporter
- enable-cevas
- enable-cis
- enable-cuses
- enable-gsl-integrators
- enable-malaes
- enable-python
- enable-rdf
- enable-spros
- enable-srus
- enable-telicems
- enable-vacss
Please refer to the `CellML API Documentations`_ for what these options
do.
.. _CellML API Documentations: http://cellml-api.sourceforge.net/
Usage
=====
As this egg is published on `pypi`_, this recipe can be used right away
by including a new part inside a ``buildout.cfg``. The following is an
example configuration:
.. _pypi: http://pypi.python.org/
::
[buildout]
parts =
...
cellml-api
cellmlpy
[cellml-api]
recipe = cellml.recipe.api
api-version = 1.10
[cellmlpy]
recipe = zc.recipe.egg
eggs =
interpreter = cellmlpy
scripts = cellmlpy
extra-paths = ${cellml-api:location}/lib/python
This example ``buildout.cfg`` will build the CellML API v1.10 with all
the supported options enabled, and a script will be generated in
``bin/cellmlpy`` which will allow the bindings to be imported without
setting ``PYTHONPATH`` and other related environmental variables.
Please refer to the examples directory for more detailed instructions
and other example usages of this recipe.
Copyright/License information
=============================
This software is released under the MPL/GPL/LGPL licenses.
Please refer to the file ``COPYING.txt`` for detailed copyright
information, and ``docs`` directory for specific licenses that this
software is released under.
Change history
**************
0.8 (2022-04-27)
================
- Force a known supported CXX standard because newest gcc defaults to
the incompatible c++17 standard.
0.7 (2019-01-23)
================
- Update distribution location.
0.6 (2018-07-31)
================
- Python 3 compatibility.
0.5 (2018-01-23)
================
- Added latest version of CellML API on github.
- Added RUNPATH into place.
0.4 (2012-11-05)
================
- Added CellML API 1.12.
0.3 (2012-10-03)
================
- Corrected typo for the TeLICeM flag.
- Added CellML API 1.11.
0.2 (2011-09-21)
================
- Fixed the issue where all the expected keys are assigned with an
empty string even if unassigned; this caused various unwanted side
effects.
- Fixed the issue where the location of this buildout recipe is
undefined.
0.1 (2011-09-21)
================
- Initial release of the CellML API Python bindings buildout.
Detailed Documentation
**********************
Demonstration
=============
This recipe extends on the ``zc.recipe.cmmi`` with the caveat where
cmake is called instead of the ``./configure`` scripts, yet have cmake
generate ``Unix Makefiles`` such that the ``make``/``make install`` that
cmmi calls will proceed as normal.
For the demonstration, instead of download/building the entire API, we
are going to make use of the mock-ups (which is previous setup).
::
>>> ls(distros)
- cellml-api-0.0fake.tgz
>>> distros_url = start_server(distros)
>>> archive_url = '%scellml-api-0.0fake.tgz' % distros_url
Let's create our buildout, but modified so that we use our fake archive.
::
>>> write('buildout.cfg',
... """
... [buildout]
... parts = cellml-api
...
... [cellml-api]
... recipe = cellml.recipe.api
... api-version = 0.0fake
... """)
As our mocked up api version is not listed as an available version,
buildout will die.
::
>>> print('start ' + system(buildout))
start...
Installing.
Getting ... cellml-api.
Initializing ... cellml-api.
...
Traceback (most recent call last):
...
ValueError: api-version `0.0fake` is not a supported version of...
<BLANKLINE>
Well, since our fake version is obviously not going to be added into the
listing of supported APIs, we can still provide our url and md5sum, as
the original function provided by ``zc.recipe.cmmi`` is still in effect.
Rewrite buildout.cfg with the desired attributes.
::
>>> try: from hashlib import md5
... except ImportError: from md5 import new as md5
>>> m = md5(open(join(distros, 'cellml-api-0.0fake.tgz'), 'rb'
... ).read()).hexdigest()
>>> write('buildout.cfg',
... """
... [buildout]
... parts = cellml-api
...
... [cellml-api]
... recipe = cellml.recipe.api
... url = %s
... md5sum = %s
... """ % (archive_url, m))
>>> print('start ' + system(buildout))
start...
...
CMake Warning:
Manually-specified variables were not used by the project:
<BLANKLINE>
CHECK_BUILD
ENABLE_ANNOTOOLS
ENABLE_CCGS
ENABLE_CELEDS
ENABLE_CELEDS_EXPORTER
ENABLE_CEVAS
ENABLE_CGRS
ENABLE_CIS
ENABLE_CUSES
ENABLE_EXAMPLES
ENABLE_GSL_INTEGRATORS
ENABLE_MALAES
ENABLE_PYTHON
ENABLE_RDF
ENABLE_SPROS
ENABLE_SRUS
ENABLE_TELICEMS
ENABLE_VACSS
<BLANKLINE>
<BLANKLINE>
<BLANKLINE>
Contributors
************
Tommy Yu, Author
Download
********
نیازمندی
| مقدار | نام |
|---|---|
| - | setuptools |
| - | zc.buildout |
| - | zc.recipe.cmmi |
| - | zope.testing |
| - | zc.buildout |
نحوه نصب
نصب پکیج whl cellml.recipe.api-0.8:
pip install cellml.recipe.api-0.8.whl
نصب پکیج tar.gz cellml.recipe.api-0.8:
pip install cellml.recipe.api-0.8.tar.gz