معرفی شرکت ها

تبلیغات ما

مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.

مشاهده بیشتر

تبلیغات ما

مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.

مشاهده بیشتر

تبلیغات ما

مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.

مشاهده بیشتر

تبلیغات ما

مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.

مشاهده بیشتر

تبلیغات ما

مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.

مشاهده بیشتر

توضیحات

An end-to-end solution for processing Capture-C, Tri-C and Tiled-C data

ویژگی	مقدار
سیستم عامل	-
نام فایل	capcruncher-0.2.3
نام	capcruncher
نسخه کتابخانه	0.2.3
نگهدارنده	[]
ایمیل نگهدارنده	[]
نویسنده	asmith
ایمیل نویسنده	alastair.smith@ndcls.ox.ac.uk
آدرس صفحه اصلی	https://github.com/sims-lab/CapCruncher.git
آدرس اینترنتی	https://pypi.org/project/capcruncher/
مجوز	GNU GENERAL PUBLIC LICENSE Version 3

# CapCruncher [![Documentation Status](https://readthedocs.org/projects/capcruncher/badge/?version=latest)](https://capcruncher.readthedocs.io/en/latest/?badge=latest) [![codecov](https://codecov.io/gh/sims-lab/CapCruncher/branch/master/graph/badge.svg?token=RHIGNMGX09)](https://codecov.io/gh/sims-lab/CapCruncher) ![CI](https://github.com/sims-lab/capture-c/actions/workflows/python-template.yml/badge.svg) [![Anaconda-Server Badge](https://anaconda.org/bioconda/capcruncher/badges/installer/conda.svg)](https://conda.anaconda.org/bioconda) [![DOI](https://zenodo.org/badge/224631087.svg)](https://zenodo.org/badge/latestdoi/224631087) [![Downloads](https://pepy.tech/badge/capcruncher)](https://pepy.tech/project/capcruncher) ## Analysis software for Capture-C, Tri-C and Tiled-C data. CapCruncher is a tool designed to automate the processing of Capture-C, Tri-C and Tiled-C data from FASTQ files, the package is written in python and consists of an end-to-end data processing pipline together with a supporting command line interface to enable finer grained control. The pipeline provided is fast, robust and scales from a laptop to a computational cluster. For further information see the [documentation](https://capcruncher.readthedocs.io/en/latest/) ## Changelog ## [0.2.3] - 2022-08-19 ### Bug Fixes - Fixes Tiled-C filtering error due to typo in index specification for remove_dual_capture_fragments - Fixed bug when annotating Tiled-C data ([#166](https://github.com/sims-lab/CapCruncher/pull/166)) with the sorted option that caused no data to be annotated as as a viewpoint or exclusion. - Fixed a bug with Tiled-C slice filtering ([#166](https://github.com/sims-lab/CapCruncher/pull/166)) that caused slices to be erronously filtered. - Fixed a bug with counting reporters in batches (this occurs when counting >1x106 slices per viewpoint) ([#166](https://github.com/sims-lab/CapCruncher/pull/166)) - Fixed a bug when merging and storing Tri-C or Tiled-C data ([#166](https://github.com/sims-lab/CapCruncher/pull/166)) using "capcruncher reporters store merge" or "capcruncher reporters store bins". This functionally has been re-written and now appears to work correctly. - Fixed a bug with plotting matrices using capcrunchers plotting capabilities ([#166](https://github.com/sims-lab/CapCruncher/pull/166)). - Fixes bug where all slices are removed from parquet files (reporter) outputs due to an upgraded dask version (the pyarrow-dataset engine has been removed). This corrects the all dataframes are empty error occurring while generating reporter statistics. ### Features - Added option to normalised CCMatrix data using ice followed by a scaling factor. - Reporter merging (paraquet) has been re-written to use pyarrow directly and is now faster and better able to split datasets into smaller files for more efficient parallel querying. ### Miscellaneous Tasks - Updated version to 0.2.3 ([#165](https://github.com/sims-lab/CapCruncher/pull/165)) - Pin conda dependency versions to speed up environment solver ([#167](https://github.com/sims-lab/CapCruncher/pull/167))

نیازمندی

مقدار	نام
-	apsw
>=0.6.7	cgatcore
-	click
-	cooler
-	dask
-	drmaa
-	gevent
-	iced
-	joblib
-	natsort
>=1	pandas
>=2.7.1	paramiko
>=4.8.0	plotly
-	pyarrow
>=0.8.1	pybedtools
>=0.15.3	pysam
-	ruffus
-	seaborn
>=1.3.18	sqlalchemy
-	tqdm
-	trackhub
-	ujson
>=0.7.3	xopen
-	xxhash
-	coolbox
-	diffxpy

زبان مورد نیاز

مقدار	نام
>=3.8	Python

نحوه نصب

نصب پکیج whl capcruncher-0.2.3:

pip install capcruncher-0.2.3.whl

نصب پکیج tar.gz capcruncher-0.2.3:

pip install capcruncher-0.2.3.tar.gz