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توضیحات

Brain Imaging Analysis Kit

ویژگی	مقدار
سیستم عامل	-
نام فایل	brainiak-0.9.1
نام	brainiak
نسخه کتابخانه	0.9.1
نگهدارنده	[]
ایمیل نگهدارنده	[]
نویسنده	Princeton Neuroscience Institute and Intel Corporation
ایمیل نویسنده	mihai.capota@intel.com
آدرس صفحه اصلی	http://brainiak.org
آدرس اینترنتی	https://pypi.org/project/brainiak/
مجوز	Apache 2

Brain Imaging Analysis Kit ========================== .. image:: https://travis-ci.org/brainiak/brainiak.svg?branch=master :target: https://travis-ci.org/brainiak/brainiak .. image:: https://codecov.io/gh/brainiak/brainiak/branch/master/graph/badge.svg :target: https://codecov.io/gh/brainiak/brainiak .. image:: https://badges.gitter.im/brainiak/brainiak.svg :alt: Join the chat at https://gitter.im/brainiak/brainiak :target: https://gitter.im/brainiak/brainiak?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge The Brain Imaging Analysis Kit is a package of Python modules useful for neuroscience, primarily focused on functional Magnetic Resonance Imaging (fMRI) analysis. The package was originally created by a collaboration between Intel and the Princeton Neuroscience Institute (PNI). To reduce verbosity, we may refer to the Brain Imaging Analysis Kit using the ``BrainIAK`` abbreviation. Whenever lowercase spelling is used (e.g., Python package name), we use ``brainiak``. Quickstart ========== If you have `Conda <conda.io>`_:: conda install -c brainiak -c defaults -c conda-forge brainiak Otherwise, or if you want to compile from source, install the requirements (see `docs/installation`) and then install from PyPI:: python3 -m pip install brainiak Note that to use the ``brainiak.matnormal`` package, you need to install additional dependencies. As of October 2020, the required versions are not available as Conda packages, so you should install from PyPI, even when using Conda:: python3 -m pip install -U tensorflow tensorflow-probability Note that we do not support Windows. Docker ====== You can also test BrainIAK without installing it using Docker:: docker pull brainiak/brainiak docker run -it -p 8888:8888 -v brainiak:/mnt --name demo brainiak/brainiak To run Jupyter notebooks in the running container, try:: python3 -m notebook --allow-root --no-browser --ip=0.0.0.0 Then visit http://localhost:8888 in your browser and enter the token. Protip: run ``screen`` before running the notebook command. Note that we do not support MPI execution using Docker containers and that performance will not be optimal. Support ======= If you have a question or feedback, chat with us on `Gitter <https://gitter.im/brainiak/brainiak>`_ or email our list at brainiak@googlegroups.com. If you find a problem with BrainIAK, you can also `open an issue on GitHub <https://github.com/brainiak/brainiak/issues>`_. Examples ======== We include BrainIAK usage examples in the examples directory of the code repository, e.g., `funcalign/srm_image_prediction_example.ipynb <https://github.com/brainiak/brainiak/blob/master/examples/funcalign/srm_image_prediction_example.ipynb>`_. To run the examples, download an archive of the `latest BrainIAK release from GitHub <https://github.com/brainiak/brainiak/releases>`_. Note that we only support the latest release at this moment, so make sure to upgrade your BrainIAK installation. Documentation ============= The documentation is available at http://brainiak.org/docs. Contributing ============ We welcome contributions. Have a look at the issues labeled "`easy`_" for starting contribution ideas. Please read the guide in `CONTRIBUTING.rst`_ first. .. _easy: https://github.com/brainiak/brainiak/issues?q=is%3Aissue+is%3Aopen+label%3Aeasy .. _CONTRIBUTING.rst: https://github.com/brainiak/brainiak/blob/master/CONTRIBUTING.rst Citing ====== Please cite BrainIAK in your publications as: "Brain Imaging Analysis Kit, http://brainiak.org." Additionally, if you use `RRIDs <https://scicrunch.org/resolver>`_ to identify resources, please mention BrainIAK as "Brain Imaging Analysis Kit, RRID:SCR_014824". Finally, please cite the publications referenced in the documentation of the BrainIAK modules you use, e.g., `SRM <http://brainiak.org/docs/brainiak.funcalign.html>`_.

زبان مورد نیاز

مقدار	نام
>=3.5	Python

نحوه نصب

نصب پکیج whl brainiak-0.9.1:

pip install brainiak-0.9.1.whl

نصب پکیج tar.gz brainiak-0.9.1:

pip install brainiak-0.9.1.tar.gz