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bioprinter-0.1.5
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تبلیغات ما
مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.
مشاهده بیشتر
تبلیغات ما
مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.
مشاهده بیشتر
تبلیغات ما
مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.
مشاهده بیشتر
تبلیغات ما
مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.
مشاهده بیشترتوضیحات
-
| ویژگی | مقدار |
|---|---|
| سیستم عامل | - |
| نام فایل | bioprinter-0.1.5 |
| نام | bioprinter |
| نسخه کتابخانه | 0.1.5 |
| نگهدارنده | [] |
| ایمیل نگهدارنده | [] |
| نویسنده | Zulko |
| ایمیل نویسنده | - |
| آدرس صفحه اصلی | https://github.com/Edinburgh-Genome-Foundry/bioprinter |
| آدرس اینترنتی | https://pypi.org/project/bioprinter/ |
| مجوز | MIT |
BioPrinter
==========
.. image:: https://github.com/Edinburgh-Genome-Foundry/bioprinter/actions/workflows/build.yml/badge.svg
:target: https://github.com/Edinburgh-Genome-Foundry/bioprinter/actions/workflows/build.yml
:alt: GitHub CI build status
.. image:: https://coveralls.io/repos/github/Edinburgh-Genome-Foundry/bioprinter/badge.svg?branch=master
:target: https://coveralls.io/github/Edinburgh-Genome-Foundry/bioprinter?branch=master
Bioprinter (webpage here_) is a Python package for producing living art. It transforms an image into files that a liquid dispenser can use to *print* the image to a plate using pigmented yeast or bacteria.
Here are two examples of bio-art:
.. figure:: https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/bioprinter/master/docs/_static/images/bioprint_dolly.jpeg
:align: center
Dolly drawn with baker yeast (white), violacein-producing yeast (black), and carotene-producing yeast (orange).
.. figure:: https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/bioprinter/master/docs/_static/images/bioprint_england.jpeg
:align: center
British flag drawn with 3 different strains of the bacterium *E. coli*.
These bio-prints (and many others!) were presented at the University of Edinburgh's SynthSys Open days 2016 (strain selection and acoustic printing by Paulina Kanigowska).
Bioprinter is released on Github_ under the MIT licence (Copyright 2015 Edinburgh Genome Foundry), everyone is welcome to contribute!
Bioprinter was written at the Edinburgh Genome Foundry by Zulko_ after an original idea and Matlab code by Mike Shen (`project on Github <https://github.com/mshen5/BioPointillism>`_).
Installation
------------
If you have PIP installed: ::
pip install ez_setup bioprinter
Or unzip the source code in a directory and type in a terminal: ::
python setup.py install
Usage
-----
The image file to be printed can have any resolution, but note that the width/height ratio of the plate the image is printed on is 1.5. Ensure that a specific color is used to mark the un-pigmented background of the image, here we use blue:
.. figure:: https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/bioprinter/master/docs/_static/images/dolly.jpeg
:align: center
Run the following code in Python or save in ``dolly.py``:
.. code:: python
from bioprinter import bioprint
bioprint(
image_filename="/path/to/image/dolly.jpeg",
output_filename="dolly.csv",
bg_color=[0, 0, 255], # blue background represents empty wells
pigments_wells={"A1": [0, 0, 0], # black yeast in source well A1
"A2": [250, 120, 10], # orange yeast in well A2
"A3": [255, 255, 255]}, # white yeast in well A3
quantified_image_filename="dolly_preview.jpeg"
)
The saved script can be executed in a terminal with ``python dolly.py``. This will produce a ``dolly.csv`` file as well as a preview image of the final printing (so that you can check if the image looks good at this low resolution).
Prepare a source plate with the right pigmented yeasts in wells A1, A2, A3, use an agar plate as the destination plate, and feed ``dolly.csv`` to the `Labcyte Echo Acoustic Liquid Handler <https://www.labcyte.com/products/liquid-handling/echo-liquid-handlers>`_ (tested with Labcyte Echo 555 Series). Once the printing is finished, incubate 2 days at 30C (it would be one day at 37C for bacteria). Enjoy the result!
.. _here: http://edinburgh-genome-foundry.github.io/bioprinter/
.. _Zulko: https://github.com/Zulko/
.. _Github: https://github.com/Edinburgh-Genome-Foundry/bioprinter
نیازمندی
| مقدار | نام |
|---|---|
| - | numpy |
| - | Pillow |
| - | pytest |
نحوه نصب
نصب پکیج whl bioprinter-0.1.5:
pip install bioprinter-0.1.5.whl
نصب پکیج tar.gz bioprinter-0.1.5:
pip install bioprinter-0.1.5.tar.gz