معرفی شرکت ها


bcforms-0.0.9


Card image cap
تبلیغات ما

مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.

مشاهده بیشتر
Card image cap
تبلیغات ما

مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.

مشاهده بیشتر
Card image cap
تبلیغات ما

مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.

مشاهده بیشتر
Card image cap
تبلیغات ما

مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.

مشاهده بیشتر
Card image cap
تبلیغات ما

مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.

مشاهده بیشتر

توضیحات

Toolkit for concretely describing macromolecular complexes
ویژگی مقدار
سیستم عامل -
نام فایل bcforms-0.0.9
نام bcforms
نسخه کتابخانه 0.0.9
نگهدارنده []
ایمیل نگهدارنده []
نویسنده Karr Lab
ایمیل نویسنده info@karrlab.org
آدرس صفحه اصلی https://github.com/KarrLab/bcforms
آدرس اینترنتی https://pypi.org/project/bcforms/
مجوز MIT
|Documentation| |Test results| |Test coverage| |Code analysis| |License| |Analytics| ``BcForms``: toolkit for concretely describing macromolecular complexes ======================================================================= ``BcForms`` is a toolkit for concretely describing the molecular structure (atoms and bonds) of macromolecular complexes, including non-canonical monomeric forms, circular topologies, and crosslinks. ``BcForms`` encompasses five tools: \* A grammar for concretely describing subunit composition and interchain crosslinks of biocomplexes. See the `documentation <https://docs.karrlab.org/bcforms/>`__ for more information. For example, the following text represents a homodimer complex with a disulfide bond between the first monomer in the first subunit and the first monomer in the second subunit. ``complex: 2 * sub_c | x-link: [ l-bond-atom: sub_c(1)-1S11 | l-displaced-atom: sub_c(1)-1H11 | r-bond-atom: sub_c(2)-1S11 | r-displaced-atom: sub_c(2)-1H11 ]`` :: This concrete representation enables the `BcForms` software tools to calculate properties of biocomplexes when the subunits are concretely defined. - Tools for calculating properties of biocomplexes including their structure, chemical formulae, molecular weights, and charges. - A web app: https://bcforms.org - A JSON REST API: https://bcforms.org/api - A command line interface. See the `documentation <https://docs.karrlab.org/bcforms/master/0.0.1/>`__ for more information. - A Python API. See the `documentation <https://docs.karrlab.org/bcforms/master/0.0.1/>`__ for more information. Installation ------------ The following is a brief guide to installing ``BcForms``. The `Dockerfile <https://github.com/KarrLab/bpforms/blob/master/Dockerfile>`__ in the ``BpForms`` repository contains detailed instructions for how to install ``BcForms`` in Ubuntu Linux. 1. Install dependencies - `ChemAxon Marvin <https://chemaxon.com/products/marvin>`__: optional to calculate major protonation and tautomerization states and draw molecules - `Java <https://www.java.com>`__ >= 1.8 - `Open Babel <http://openbabel.org>`__ - `Pip <https://pip.pypa.io>`__ >= 19.0 - `Python <https://www.python.org>`__ >= 3.6 2. Install this package - Install the latest release from PyPI ``pip install bcforms[all]`` - Install the latest revision from GitHub ``pip install git+https://github.com/KarrLab/pkg_utils.git#egg=pkg_utils pip install git+https://github.com/KarrLab/wc_utils.git#egg=wc_utils[chem, protonation] pip install git+https://github.com/KarrLab/bpforms.git#egg=bpforms pip install git+https://github.com/KarrLab/bcforms.git#egg=bcforms[all]`` - To draw molecules, ``BcForms`` must be installed with the ``[draw]`` option: ``pip install bcforms[draw] pip install git+https://github.com/KarrLab/bcforms.git#egg=bcforms[draw]`` - To install the REST API, ``BcForms`` must be installed with the ``[rest_api option]``: ``pip install bcforms[rest_api] pip install git+https://github.com/KarrLab/bcforms.git#egg=bcforms[rest_api]`` Documentation ------------- Please see the `API documentation <https://docs.karrlab.org/bcforms>`__. License ------- The package is released under the `MIT license <LICENSE>`__. Development team ---------------- This package was developed by the `Karr Lab <https://www.karrlab.org>`__ at the Icahn School of Medicine at Mount Sinai in New York, USA. - `Jonathan Karr <https://www.karrlab.org>`__ - `Xiaoyue Zheng <https://www.linkedin.com/in/xiaoyue-zheng/>`__ Questions and comments ---------------------- Please contact the `Karr Lab <mailto:info@karrlab.org>`__ with any questions or comments. .. |Documentation| image:: https://readthedocs.org/projects/bcforms/badge/?version=latest :target: https://docs.karrlab.org/bcforms .. |Test results| image:: https://circleci.com/gh/KarrLab/bcforms.svg?style=shield :target: https://circleci.com/gh/KarrLab/bcforms .. |Test coverage| image:: https://coveralls.io/repos/github/KarrLab/bcforms/badge.svg :target: https://coveralls.io/github/KarrLab/bcforms .. |Code analysis| image:: https://api.codeclimate.com/v1/badges/c8f15ac1e50c27ca44cc/maintainability :target: https://codeclimate.com/github/KarrLab/bcforms .. |License| image:: https://img.shields.io/github/license/KarrLab/bcforms.svg :target: LICENSE .. |Analytics| image:: https://ga-beacon.appspot.com/UA-86759801-1/bcforms/README.md?pixel


نیازمندی

مقدار نام
>=0.0.15 bpforms
>=3.0.0 cement
>=0.6.6 lark-parser
<3 openbabel
- setuptools
>=0.0.14 wc-utils[chem]
- capturer
- flask
- flask-restplus
- mock
>=1.8 sphinx
- sphinx-fontawesome
>=0.4.2 sphinx-rtd-theme
>=0.1.1 sphinxcontrib-addmetahtml
- sphinxcontrib-bibtex
>=0.1.1 sphinxcontrib-googleanalytics
- sphinxcontrib-spelling
- sphinxprettysearchresults
>=0.0.15 wc-utils[protonation]
>=1.8 sphinx
- sphinx-fontawesome
>=0.4.2 sphinx-rtd-theme
>=0.1.1 sphinxcontrib-addmetahtml
- sphinxcontrib-bibtex
>=0.1.1 sphinxcontrib-googleanalytics
- sphinxcontrib-spelling
- sphinxprettysearchresults
>=0.0.15 wc-utils[protonation]
- flask
- flask-restplus
- capturer
- mock


نحوه نصب


نصب پکیج whl bcforms-0.0.9:

    pip install bcforms-0.0.9.whl


نصب پکیج tar.gz bcforms-0.0.9:

    pip install bcforms-0.0.9.tar.gz