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alphastats-0.4.0
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مشاهده بیشترتوضیحات
An open-source Python package for Mass Spectrometry Analysis
| ویژگی | مقدار |
|---|---|
| سیستم عامل | - |
| نام فایل | alphastats-0.4.0 |
| نام | alphastats |
| نسخه کتابخانه | 0.4.0 |
| نگهدارنده | [] |
| ایمیل نگهدارنده | [] |
| نویسنده | Mann Labs |
| ایمیل نویسنده | elena.krismer@hotmail.com |
| آدرس صفحه اصلی | https://github.com/MannLabs/alphastats |
| آدرس اینترنتی | https://pypi.org/project/alphastats/ |
| مجوز | Apache |
[](https://badge.fury.io/py/alphastats)
[](https://codecov.io/gh/MannLabs/alphastats)
[](https://pepy.tech/project/alphastats)
[](https://pepy.tech/project/alphastats)
[](https://github.com/MannLabs/alphapeptstats/actions/workflows/python-package.yml)
[](https://alphapeptstats.readthedocs.io/en/latest/?badge=latest)
<img src="https://github.com/MannLabs/alphapeptstats/blob/main/misc/alphastats_workflow.png?raw=true" width="964.25" height="486.5">
<div align = center>
<br>
<br>
[<kbd> <br> Documentation <br> </kbd>][link]
</div>
<br>
<br>
[link]:https://alphapeptstats.readthedocs.io/en/main/
An open-source Python package of the AlphaPept ecosystem from the [Mann Group at the University of Copenhagen](https://www.biochem.mpg.de/mann).
* [**About**](#about)
* [**Installation**](#installation)
* [**Usage**](#usage)
* [**Troubleshooting**](#troubleshooting)
* [**Citations**](#citations)
* [**License**](#license)
* [**How to contribute**](#how-to-contribute)
* [**Changelog**](#changelog)
---
## About
An open-source Python package for downstream mass spectrometry downstream data analysis from the [Mann Group at the University of Copenhagen](https://www.cpr.ku.dk/research/proteomics/mann/).
---
## Installation
AlphaStats can be installed in an existing Python 3.8/3.9/3.10 environment with a single `bash` command.
```bash
pip install alphastats
```
---
## Usage
For the Graphical User Interface
```bash
alphastats gui
```
AlphaStats can be imported as a Python package into any Python script or notebook with the command `import alphastats`.
A brief [Jupyter notebook tutorial](nbs/getting_started.ipynb) on how to use the API is also present in the [nbs folder](nbs).
---
## GUI
## Troubleshooting
In case of issues, check out the following:
* [Issues](https://github.com/MannLabs/alphapeptstats/issues): Try a few different search terms to find out if a similar problem has been encountered before
---
## License
AlphaStats was developed by the [Mann Group at the University of Copenhagen](https://www.cpr.ku.dk/research/proteomics/mann/) and is freely available with an [Apache License](LICENSE.txt). External Python packages (available in the [requirements](requirements) folder) have their own licenses, which can be consulted on their respective websites.
---
## How to contribute
If you like this software, you can give us a [star](https://github.com/MannLabs/alphapeptstats/stargazers) to boost our visibility! All direct contributions are also welcome. Feel free to post a new [issue](https://github.com/MannLabs/alphapeptstats/issues) or clone the repository and create a [pull request](https://github.com/MannLabs/alphapeptstats/pulls) with a new branch. For an even more interactive participation, check out the [discussions](https://github.com/MannLabs/alphapeptstats/discussions) and the [the Contributors License Agreement](misc/CLA.md).
---
## Changelog
See the [HISTORY.md](HISTORY.md) for a full overview of the changes made in each version.
نیازمندی
| مقدار | نام |
|---|---|
| - | pandas |
| - | scikit-learn |
| - | data-cache |
| - | plotly |
| - | statsmodels |
| - | iteration-utilities |
| - | openpyxl |
| - | sklearn-pandas |
| - | pingouin |
| - | scipy |
| - | tqdm |
| - | diffxpy |
| - | anndata |
| - | umap-learn |
| - | streamlit |
| - | tables |
| - | numpy |
| - | numba |
| - | numba-stats |
| - | swifter |
| - | click |
| - | jupyter |
| - | jupyter-contrib-nbextensions |
| - | pyinstaller |
| - | autodocsumm |
| - | sphinx-rtd-theme |
| - | twine |
| - | bumpversion |
| - | pipdeptree |
| - | ipykernel |
| - | tqdm |
| - | psutil |
| - | jupyter |
| - | jupyter-contrib-nbextensions |
| - | pyinstaller |
| - | autodocsumm |
| - | sphinx-rtd-theme |
| - | twine |
| - | bumpversion |
| - | pipdeptree |
| - | ipykernel |
| - | tqdm |
| - | psutil |
| - | streamlit |
| - | streamlit-multipage |
| >=1.12.2 | streamlit |
| >=0.0.18 | streamlit-multipage |
| ==1.5.2 | pandas |
| ==1.2.0 | scikit-learn |
| >=0.1.6 | data-cache |
| ==5.11.0 | plotly |
| ==0.13.5 | statsmodels |
| - | iteration-utilities |
| >=3.0.10 | openpyxl |
| ==2.2.0 | sklearn-pandas |
| ==0.5.3 | pingouin |
| ==1.10.0 | scipy |
| >=4.64.0 | tqdm |
| ==0.7.4 | diffxpy |
| ==0.8.0 | anndata |
| ==0.5.3 | umap-learn |
| ==1.17.0 | streamlit |
| ==3.6.1 | tables |
| ==1.23.5 | numpy |
| ==0.56.4 | numba |
| ==0.5.0 | numba-stats |
| ==1.0.7 | swifter |
| ==8.0.1 | click |
زبان مورد نیاز
| مقدار | نام |
|---|---|
| >=3.7,<4 | Python |
نحوه نصب
نصب پکیج whl alphastats-0.4.0:
pip install alphastats-0.4.0.whl
نصب پکیج tar.gz alphastats-0.4.0:
pip install alphastats-0.4.0.tar.gz