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توضیحات

Application to add MLG

ویژگی	مقدار
سیستم عامل	POSIX :: Linux
نام فایل	MLG-assign-1.0.3
نام	MLG-assign
نسخه کتابخانه	1.0.3
نگهدارنده	[]
ایمیل نگهدارنده	[]
نویسنده	Sébastien Ravel
ایمیل نویسنده	-
آدرس صفحه اصلی	https://github.com/sravel/MLG_assign
آدرس اینترنتی	https://pypi.org/project/MLG-assign/
مجوز	LGPL license

============================= Multi-Locus Genotypes assign ============================= .. contents:: Table of Contents :depth: 2 About this package ------------------ |PythonVersions| |PypiPackage| Multi-Locus Genotypes (MLGs) are frequently used to carry out population genetics of clonal organisms. Tools to assign genotyped individuals to MLGs were integrated in some genetic software. However, these tools usually fail to appropriately deal with missing data. Missing data sometimes lead to potentially assign a individual genotype to several MLGs. For example, the multilocus genotype 100/200/999 (where 999 is a missing data) could be assigned to MLG 100/200/300 and to MLG 100/200/302. Despite this ambiguity, most tools assign the genotype with missing data to one or the other MLG. We developed a script that : * group in the same MLG individuals with no missing data and with the same genotype, * mark as unassigned individuals with missing data that could be assigned to more than one MLG. .. csv-table:: Exemple of multilocus genotype table :widths: 10,10,10,10,10,10,10,10,10,10,10,10,10 :header-rows: 1 "","Pymrs47","Pyrms427","Pyrms657","Pyrms77B","Pyrms63","Pyrms83B","Pyrms607","Pyrms37","Pyrms233","Pyrms319","Pyrms99B","Pyrms43B" "MD2249","163","211","168","200","151","115","284","197","253","284","241","350" "MD2245","163","211","168","202","151","115","284","197","253","284","241","999" "MD2129","163","211","168","194","151","115","284","197","253","284","241","999" "MD2125","163","211","168","194","151","115","284","197","253","284","241","999" "MD2124","163","211","168","194","151","115","284","197","253","284","241","999" "MD1936","163","211","168","194","151","115","284","197","253","284","241","999" "MD1832","163","213","168","194","151","115","284","197","253","284","241","999" "MD1831","163","213","168","194","151","115","284","197","253","284","241","999" "MD1826","163","213","168","194","151","115","284","197","253","284","241","999" "MD1708","163","211","168","194","151","999","281","197","253","284","241","328" "MD1689","163","211","168","194","151","999","278","197","253","284","241","999" Install ------- :: pip3 install MLG_assign Usage ----- Running MLG_assign with GUI ^^^^^^^^^^^^^^^^^^^^^^^^^^^ * To run the gui, just call program :: MLG_assign # or MLG_assign gui Running MLG_assign with command line ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ :: # see help MLG_assign cmd -h usage: MLG_assign cmd [-h] -e <path/to/file/Excel> -s sheet name> optional arguments: -h, --help show this help message and exit Input mandatory infos for running: -e <path/to/file/Excel>, --excel <path/to/file/Excel> Matrix excel file -s sheet name>, --sheet sheet name> Name of sheet in excel file # run script MLG_assign cmd -e Test_MLG.xlsx -s test Test data --------- Data test avail at: https://github.com/sravel/MLG_assign/blob/master/Test_MLG.xlsx :: wget https://github.com/sravel/MLG_assign/blob/master/Test_MLG.xlsx .. |PythonVersions| image:: https://img.shields.io/badge/python-3.7+-blue.svg :target: https://www.python.org/downloads :alt: Python /3.7+ .. |PypiPackage| image:: https://badge.fury.io/py/MLG-assign.svg :target: https://badge.fury.io/py/MLG-assign :alt: PyPi MLG-assign

نیازمندی

مقدار	نام
>=1.0.0	pandas
>=2.6.0	openpyxl
>=1.0.4.0	gooey

نحوه نصب

نصب پکیج whl MLG-assign-1.0.3:

pip install MLG-assign-1.0.3.whl

نصب پکیج tar.gz MLG-assign-1.0.3:

pip install MLG-assign-1.0.3.tar.gz