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IQDMPDF-0.3.0
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مشاهده بیشتر
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مشاهده بیشتر
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مشاهده بیشتر
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مشاهده بیشترتوضیحات
Scans a directory for IMRT QA results
| ویژگی | مقدار |
|---|---|
| سیستم عامل | OS Independent |
| نام فایل | IQDMPDF-0.3.0 |
| نام | IQDMPDF |
| نسخه کتابخانه | 0.3.0 |
| نگهدارنده | ['Dan Cutright'] |
| ایمیل نگهدارنده | [] |
| نویسنده | Dan Cutright |
| ایمیل نویسنده | - |
| آدرس صفحه اصلی | https://github.com/IQDM/IQDM-PDF |
| آدرس اینترنتی | https://pypi.org/project/IQDMPDF/ |
| مجوز | MIT License |
IQDM-PDF
========
|build| |Docs| |pypi| |python-version| |lgtm| |lgtm-cq| |Codecov| |lines| |repo-size| |code-style|
What does it do?
----------------
Scans a directory for IMRT QA reports and parses data into a CSV.
Other information
-----------------
This library is part of the IMRT QA Data Mining (IQDM) project for
the AAPM `IMRT Working Group (WGIMRT) <https://www.aapm.org/org/structure/?committee_code=WGIMRT>`__.
- Free software: `MIT license <https://github.com/IQDM/IQDM-PDF/blob/master/LICENSE>`__
- Documentation: `Read the docs <https://iqdm-pdf.readthedocs.io>`__
- Tested on Python 3.6, 3.7, 3.8, 3.9
Dependencies
------------
* `pdfminer.six <https://github.com/pdfminer/pdfminer.six>`__
* `tqdm <https://github.com/tqdm/tqdm>`__
Install
-------
Latest PyPI release:
$ pip install iqdmpdf
Install from source:
$ python setup.py install
If you do not have a C++ compiler installed, you might have issues with
installing the latest version of pdfminer.six. The following might resolve
your issue:
$ pip install pdfminer.six==20200726
Usage
-----
To scan a directory for IMRT QA report files and generate a results .csv file
into your current directory:
$ iqdmpdf [init_directory]
As of v0.2.2, multi-threading is enabled. For example, you can enable 4
simultaneous threads with the following:
$ iqdmpdf [init_directory] -n 4
.. code-block:: console
usage: iqdmpdf [-h] [-ie] [-od OUTPUT_DIR] [-of OUTPUT_FILE] [-ver] [-nr]
[-re] [-n PROCESSES]
[init_directory]
Command line interface for IQDM-PDF
positional arguments:
init_directory Initiate scan here
optional arguments:
-h, --help show this help message and exit
-ie, --ignore-extension
Script will check all files, not just ones with .pdf
extensions
-od OUTPUT_DIR, --output-dir OUTPUT_DIR
Output stored in local directory by default, specify
otherwise here
-of OUTPUT_FILE, --output-file OUTPUT_FILE
Output will be saved as <report_type>_results_<time-
stamp>.csv by default. Define this tag to customize
file name after <report_type>_
-ver, --version Print the IQDM version
-nr, --no-recursive-search
Include this flag to skip sub-directories
-re, --raise-errors Allow failed file parsing to halt the program
-n PROCESSES, --processes PROCESSES
Enable multiprocessing, set number of parallel
processes
Vendor Compatibility
--------------------
We plan to support many vendors. If the report is very consistent, a new JSON
file in the `report_templates <https://github.com/IQDM/IQDM-PDF/tree/master/IQDMPDF/report_templates>`__
is essentially all that is needed. Additional documentation for custom
templates can be found `here <https://iqdm-pdf.readthedocs.io/en/latest/methods.html#building-a-new-template>`__.
* `Sun Nuclear <http://sunnuclear.com>`__: *SNC Patient*
* `ScandiDos <http://scandidos.com>`__: *Delta4*
* `PTW <https://www.ptwdosimetry.com/>`__: *VeriSoft*
Credits
-------
----------------
Development Lead
----------------
* Dan Cutright
------------
Contributors
------------
* Marc Chamberland
* Aditya Panchal
---------
Test Data
---------
Example IMRT QA reports used for unit testing and design are available `here <https://github.com/IQDM/IQDM-PDF/tree/master/tests/test_data/example_reports>`__.
* Dan Cutright, University of Chicago Hospital
* delta4/UChicago
* sncpatient/UChicago
* Marc Chamberland, University of Vermont Health Network
* sncpatient/UVermontHealthNetwork
* Serpil Kucuker Dogan, Nortwestern Memorial Hospital
* sncpatient/Northwestern_Memorial
* sncpatient2020/Northwestern_Memorial
* Aditya Panchal, AMITA Health
* verisoft/AMITA_Health
* Michael Snyder, Beaumont Health
* sncpatient/Beaumont
.. |build| image:: https://github.com/IQDM/IQDM-PDF/workflows/build/badge.svg
:target: https://github.com/IQDM/IQDM-PDF/actions
:alt: build
.. |pypi| image:: https://img.shields.io/pypi/v/IQDMPDF.svg
:target: https://pypi.org/project/IQDMPDF
:alt: PyPI
.. |python-version| image:: https://img.shields.io/pypi/pyversions/IQDMPDF.svg
:target: https://pypi.org/project/IQDMPDF
:alt: Python Version
.. |lgtm-cq| image:: https://img.shields.io/lgtm/grade/python/g/IQDM/IQDM-PDF.svg?logo=lgtm&label=code%20quality
:target: https://lgtm.com/projects/g/IQDM/IQDM-PDF/context:python
:alt: lgtm code quality
.. |lgtm| image:: https://img.shields.io/lgtm/alerts/g/IQDM/IQDM-PDF.svg?logo=lgtm
:target: https://lgtm.com/projects/g/IQDM/IQDM-PDF/alerts
:alt: lgtm
.. |Codecov| image:: https://codecov.io/gh/IQDM/IQDM-PDF/branch/master/graph/badge.svg?token=C1B5689HQH
:target: https://codecov.io/gh/IQDM/IQDM-PDF
:alt: Codecov
.. |Docs| image:: https://readthedocs.org/projects/iqdm-pdf/badge/?version=latest
:target: https://iqdm-pdf.readthedocs.io/en/latest/?badge=latest
:alt: Documentation Status
.. |lines| image:: https://img.shields.io/tokei/lines/github/iqdm/iqdm-pdf
:target: https://img.shields.io/tokei/lines/github/iqdm/iqdm-pdf
:alt: Lines of code
.. |repo-size| image:: https://img.shields.io/github/languages/code-size/iqdm/iqdm-pdf
:target: https://img.shields.io/github/languages/code-size/iqdm/iqdm-pdf
:alt: Repo Size
.. |code-style| image:: https://img.shields.io/badge/code%20style-black-000000.svg
:target: https://github.com/psf/black
:alt: Code style: black
نیازمندی
| مقدار | نام |
|---|---|
| - | pdfminer.six |
| - | tqdm |
زبان مورد نیاز
| مقدار | نام |
|---|---|
| >3.5 | Python |
نحوه نصب
نصب پکیج whl IQDMPDF-0.3.0:
pip install IQDMPDF-0.3.0.whl
نصب پکیج tar.gz IQDMPDF-0.3.0:
pip install IQDMPDF-0.3.0.tar.gz