معرفی شرکت ها
FigureGenerator-0.0.2
تبلیغات ما
مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.
مشاهده بیشتر
تبلیغات ما
مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.
مشاهده بیشتر
تبلیغات ما
مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.
مشاهده بیشتر
تبلیغات ما
مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.
مشاهده بیشتر
تبلیغات ما
مشتریان به طور فزاینده ای آنلاین هستند. تبلیغات می تواند به آنها کمک کند تا کسب و کار شما را پیدا کنند.
مشاهده بیشترتوضیحات
Making screenshots for presentations and manuscripts.
| ویژگی | مقدار |
|---|---|
| سیستم عامل | - |
| نام فایل | FigureGenerator-0.0.2 |
| نام | FigureGenerator |
| نسخه کتابخانه | 0.0.2 |
| نگهدارنده | [] |
| ایمیل نگهدارنده | [] |
| نویسنده | Sarthak Pati |
| ایمیل نویسنده | software@cbica.upenn.edu |
| آدرس صفحه اصلی | - |
| آدرس اینترنتی | https://pypi.org/project/FigureGenerator/ |
| مجوز | BSD-3-Clause License |
# Figure Generator
[](https://pypi.org/project/FigureGenerator/)
[](https://github.com/CBICA/FigureGenerator/actions/workflows/python-package.yml)
[](https://www.codacy.com/gh/CBICA/FigureGenerator/dashboard?utm_source=github.com&utm_medium=referral&utm_content=CBICA/FigureGenerator&utm_campaign=Badge_Grade)
[](https://www.codacy.com/gh/CBICA/FigureGenerator/dashboard?utm_source=github.com&utm_medium=referral&utm_content=CBICA/FigureGenerator&utm_campaign=Badge_Coverage)
[](https://github.com/psf/black)
This project helps create high quality figures for medical images for use in presentations and/or manuscripts.
## Installation
```powershell
git clone https://github.com/CBICA/FigureGenerator.git
cd screenshot_maker
conda create -n venv_screenshot python=3.7 -y
conda activate venv_screenshot
pip install -e .
```
OR directly via Pip:
```powershell
pip install FigureGenerator
```
## Usage
```
python ./figure_generator -h
usage: FigureGenerator [-h] -images IMAGES [-masks MASKS] [-opacity OPACITY]
[-ylabels YLABELS] -output OUTPUT [-axisrow AXISROW]
[-boundimg BOUNDIMG] [-boundmask BOUNDMASK]
[-borderpc BORDERPC] [-v]
Constructing screenshots from medical images.
Contact: software@cbica.upenn.edu
This program is NOT FDA/CE approved and NOT intended for clinical use.
Copyright (c) 2021 University of Pennsylvania. All rights reserved.
optional arguments:
-h, --help show this help message and exit
-images IMAGES Input image files (comma-separated without any spaces in path and co-registered)
-masks MASKS Mask files (comma-separated without any spaces in path and co-registered with images); if multiple files are passed, first is ground truth
-opacity OPACITY Mask opacity between 0-1
-ylabels YLABELS The comma-separated ylabels that will be displayed on the subplots' y-axis
-output OUTPUT Output screenshot file
-axisrow AXISROW Put all axes views across each column and stack images and blends in rows, defaults to False
-boundimg BOUNDIMG Construct bounding box around non-zero pixels of input images
-boundmask BOUNDMASK Construct bounding box around binarized ground truth
-borderpc BORDERPC Percentage of size to use as border around bounding box (used only when mask and bounded are defined)
-v, --version Show program's version number and exit.
```
## Examples
### **Vertical** screenshot of multiple images **without** bounding:
```powershell
python ./figure_generator \
-images C:/input/subject_001_flair.nii.gz,C:/input/subject_001_t1ce.nii.gz,C:/input/subject_001_t1.nii.gz,C:/input/subject_001_t2.nii.gz \
-masks C:/input/subject_001_seg.nii.gz \
-axisrow False \
-output C:/input/fig.png
```
Gives the following output:
<p align="center">
<img width="450" src="images/fig_axisrowfalse.png">
</p>
<!-- full-size image
[<img src="images/fig_axisrowfalse.png" width="450"/>](axisrow_false)
-->
### **Horizontal** screenshot of multiple images **without** bounding:
```powershell
python ./figure_generator \
-images C:/input/subject_001_flair.nii.gz,C:/input/subject_001_t1ce.nii.gz,C:/input/subject_001_t1.nii.gz,C:/input/subject_001_t2.nii.gz \
-masks C:/input/subject_001_seg.nii.gz \
-axisrow True \
-output C:/input/fig.png
```
Gives the following output:
[<img src="images/fig_axisrowtrue.png" width="900"/>](axisrow_true)
<!-- full-size image
-->
### Horizontal screenshot of multiple images with **image-based bounding**:
```powershell
python ./figure_generator \
-images C:/input/subject_001_flair.nii.gz,C:/input/subject_001_t1ce.nii.gz,C:/input/subject_001_t1.nii.gz,C:/input/subject_001_t2.nii.gz \
-masks C:/input/subject_001_seg.nii.gz \
-axisrow True \
-bounded True \
-output C:/input/fig.png
```
Gives the following output:
[<img src="images/fig_axisrowtrue_boundedimage.png" width="900"/>](axistrue_boundedimage)
<!-- full-size image
-->
**Note**: This can be used with vertical orientation as well, by passing `-axisrow False` to the command.
### Horizontal screenshot of multiple images with **mask-based bounding**:
```powershell
python ./figure_generator \
-images C:/input/subject_001_flair.nii.gz,C:/input/subject_001_t1ce.nii.gz,C:/input/subject_001_t1.nii.gz,C:/input/subject_001_t2.nii.gz \
-masks C:/input/subject_001_seg.nii.gz \
-axisrow True \
-boundmask True \
-borderpc 0.001 \
-output C:/input/fig.png
```
Gives the following output:
[<img src="images/fig_axisrowtrue_boundedmask.png" width="900"/>](axistrue_boundedmask)
<!-- full-size image
-->
**Note**: This can be used with vertical orientation as well, by passing `-axisrow False` to the command.
## Feedback
Please post on GitHub [Discussions](https://github.com/CBICA/FigureGenerator/discussions) or post an [issue](https://github.com/CBICA/FigureGenerator/issues/new/choose).
زبان مورد نیاز
| مقدار | نام |
|---|---|
| >=3.6 | Python |
نحوه نصب
نصب پکیج whl FigureGenerator-0.0.2:
pip install FigureGenerator-0.0.2.whl
نصب پکیج tar.gz FigureGenerator-0.0.2:
pip install FigureGenerator-0.0.2.tar.gz