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FHIRstorm-0.0.1.dev6
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SMART on FHIR client for Python
| ویژگی | مقدار |
|---|---|
| سیستم عامل | - |
| نام فایل | FHIRstorm-0.0.1.dev6 |
| نام | FHIRstorm |
| نسخه کتابخانه | 0.0.1.dev6 |
| نگهدارنده | [] |
| ایمیل نگهدارنده | [] |
| نویسنده | Rick Copeland |
| ایمیل نویسنده | rick@arborian.com |
| آدرس صفحه اصلی | https://github.com/Arborian/fhirstorm |
| آدرس اینترنتی | https://pypi.org/project/FHIRstorm/ |
| مجوز | Apache License Version 2.0 |
# FHIRstorm
## SMART on FHIR for Python
You know, because SMART on FHIR is the name of the protocol
... and Firestorm is a DC hero who's basically a really smart guy
... who is on fire.
Also, I couldn't easily find any puns having to do with intelligent snakes
on fire.
## Getting started
### Obtain FHIRstorm:
```
pip install fhirstorm
```
### Obtain app credentials from a SMART on FHIR installation:
You can get free sandbox credentials from one of the following:
- [SMART on FHIR SmartHealthIT Sandbox][smarthealthit]
- [Healthcare Services Platform Consortium Sandbox][hspc]
- [Open Epic][epic]
- [Cerner Millenium][cerner]
- [Allscripts][allscripts]
[smarthealthit]: http://docs.smarthealthit.org/
[hspc]: https://sandbox.hspconsortium.org/
[epic]: https://open.epic.com/
[cerner]: http://fhir.cerner.com/millennium/dstu2/
[allscripts]: https://developer.allscripts.com/
You'll need to be ready with a `redirect_url` when you sign up (this
is where you'll receive the OAuth2 callback that gives you a code that
you'll exchange for an authorization token.)
### Obtain an authorization code
```python
import os
from fhirstorm import Connection, auth
# Replace with the service root of your SMART on FHIR endpoint
SERVICE_ROOT = 'https://sb-fhir-stu3.smarthealthit.org/smartstu3/data'
CLIENT_ID = '<you get this when you register your app>'
REDIRECT_URI = '<YOUR OWN url, to which the FHIR endpoint will redirect the user>'
CLIENT_SECRET = '<you *might* get one of these when you register your app>'
INTERNAL_SECRET = 'itsaseekrit' # please do better than this
# You need this if you used a `http://localhost...` redirect url
os.environ['OAUTHLIB_INSECURE_TRANSPORT'] = 'true'
conn = Connection(SERVICE_ROOT)
# Get the particular REST endpoint (there's usually just the one)
service = conn.metadata.rest[0]
# Get your authorization url
authorization_url, state = auth.authorization_url(
service,
client_id=CLIENT_ID,
client_secret=CLIENT_SECRET,
redirect_uri=REDIRECT_URI,
scope='profile openid offline_access launch/patient patient/*.*',
state=auth.jwt_state(INTERNAL_SECRET),
aud=SERVICE_ROOT)
```
Now, send the user to the URL you just got.
Best practice is for you to also save the `state` variable somewhere safe, and
verify that the identical state is passed back to you.
In this example, however, I'll do the less-safe "verify that some valid signed
JWT was passed back to you."
The user will be redirected back to you redirect_uri after they log in (sandbox
credentials are different for each of the sandboxes; consult their documentation
for the correct credentials to use when logging in)
### Obtain an authorization token
Once you have received the callback, use the *whole URL* you received (it should include
a state and code parameter, at a minimum):
```python
# Assuming you've stored the actual redirect URL received into authorization response...
tok = auth.fetch_token(
service, CLIENT_ID, REDIRECT_URI,
authorization_response,
client_secret=CLIENT_SECRET, # if you have one, otherwise leave it off
state_validator=auth.jwt_state_validator(INTERNAL_SECRET))
# Or if you saved the state:
tok = auth.fetch_token(
service, CLIENT_ID, REDIRECT_URI,
authorization_response,
client_secret=CLIENT_SECRET, # if you have one, otherwise leave it off
state=STATE_VALUE_YOU_SAVED)
```
Now you can use this token to access the various FHIR resources. Save it somewhere safe.
```python
conn = Connection(
SERVICE_ROOT,
session=OAuth2Session(
client_id=CLIENT_ID, token=token))
service = connection.metadata.rest[0]
```
In many of the implementations, you'll get the patient ID right in the token. Sometimes, it
comes (in JWT form!) inside the encoded access token:
```python
import jwt
patient_id = token.get('patient')
if patient_id is None:
decoded = jwt.decode(token['access_token'], verify=False)
patient_id = decoderd.get('local_patient_id')
```
Once you've been authorized, though, you can get resources off the `service.r` object:
```python
# Fetch the patient
p = service.r.Patient.fetch(patient_id)
# Get all medication orders for the patient
res = service.r.MedicationOrder.search(dict(patient=p.id))
```
### What next?
Now that you've gotten started, you can check out the Jupyter Notebook [tutorials][tutorials] for more detail.
Get FHIRing!
[tutorials]: ./notebooks
نحوه نصب
نصب پکیج whl FHIRstorm-0.0.1.dev6:
pip install FHIRstorm-0.0.1.dev6.whl
نصب پکیج tar.gz FHIRstorm-0.0.1.dev6:
pip install FHIRstorm-0.0.1.dev6.tar.gz