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توضیحات

Cerebro Viewer - A pythonic 3D viewer to visualize and plot brains

ویژگی	مقدار
سیستم عامل	-
نام فایل	Cerebro-Viewer-0.0.9.6
نام	Cerebro-Viewer
نسخه کتابخانه	0.0.9.6
نگهدارنده	[]
ایمیل نگهدارنده	[]
نویسنده	-
ایمیل نویسنده	"Sina Mansour L." <sina.mansour.lakouraj@gmail.com>
آدرس صفحه اصلی	-
آدرس اینترنتی	https://pypi.org/project/Cerebro-Viewer/
مجوز	-

# Cerebro_Viewer A pythonic 3D viewer to visualize and plot brains and neuroimaging data ![alt text](https://github.com/sina-mansour/Cerebro_Viewer/blob/main/static/images/screen.png?raw=true) --- ## Citing Cerebro: Thanks for choosing Cerebro! We're honored to have you as a user. If you end up using our code in your project or research (which we hope you will!), we'd be grateful if you could give us a little shout-out by including a citation in your publication. This helps us spread the word, motivates us to keep making it better, and gives us warm and fuzzy feelings inside! 😊 Here's the reference you can use: Sina Mansour L. (2023). Cerebro_Viewer A Pythonic 3D viewer to visualize and plot brains (v0.0.9). Zenodo. https://doi.org/10.5281/zenodo.7885669 [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7885669.svg)](https://doi.org/10.5281/zenodo.7885669) Cerebro is a work in progress, and we're excited to share more with you soon! We're currently working on a manuscript that will explain how to use the software in your work. As soon as that's available, we'll let you know so you can cite it in your publication. Thanks for being part of our journey! --- Cerebro aims to provide a solution to advance the currently available methods for visualization of neuroimaging and brain connectivity data. ## Installation [Cerebro](https://pypi.org/project/Cerebro-Viewer/) is provided as a python package and requires Python 3. To install the package, simply run the following command: `pip install Cerebro-Viewer` --- ## Motivation Were you ever stuck when trying to visualize your study findings? Did you want to visualize different data formats and notice there’s no software to visualize them ALL in one place? Have you thought about a different way to present your findings but couldn’t find a tool to do it? Do you find limitations in current neuroimaging visualization software? And finally, did you ever want to generate nice brain visualizations within your script (without launching third-party software) and found the existing packages incapable/slow? Cerebro aims to provide a solution that tries to answer these needs. --- ## Development plan Cerebro is currently under active development. The plan is to further develop exciting features through open-source contributions and discussions during hackathons, brainhacks, and other relevant opportunities. Checkout the [contributors page](Contributors.md) to find out more. --- To try the package, run the following code after installation: ```python from cerebro import cerebro_brain_utils as cbu from cerebro import cerebro_brain_viewer as cbv my_brain_viewer = cbv.Cerebro_brain_viewer() # render a surface surface = 'pial' surface_model = my_brain_viewer.load_template_GIFTI_cortical_surface_models(surface) cifti_space = my_brain_viewer.visualize_cifti_space() # render data over surface dscalar_file = cbu.get_data_file(f'templates/HCP/dscalars/hcp.gradients.dscalar.nii') dscalar_layer = my_brain_viewer.add_cifti_dscalar_layer(dscalar_file=dscalar_file,) # enter interactive view my_brain_viewer.show() ```

نیازمندی

مقدار	نام
>=1.19	numpy
-	matplotlib
-	scipy
-	nibabel
-	trimesh
-	open3d
-	Panda3D
-	scikit-image

زبان مورد نیاز

مقدار	نام
>=3.7	Python

نحوه نصب

نصب پکیج whl Cerebro-Viewer-0.0.9.6:

pip install Cerebro-Viewer-0.0.9.6.whl

نصب پکیج tar.gz Cerebro-Viewer-0.0.9.6:

pip install Cerebro-Viewer-0.0.9.6.tar.gz