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توضیحات

Flexible feature arithmetic, seamlessly integrated with nested coordinate systems.

ویژگی	مقدار
سیستم عامل	-
نام فایل	BioCantor-0.4.5
نام	BioCantor
نسخه کتابخانه	0.4.5
نگهدارنده	[]
ایمیل نگهدارنده	[]
نویسنده	Inscripta, Inc.
ایمیل نویسنده	-
آدرس صفحه اصلی	https://github.com/InscriptaLabs/BioCantor
آدرس اینترنتی	https://pypi.org/project/BioCantor/
مجوز	-

# BioCantor ## Overview Flexible feature arithmetic, seamlessly integrated with nested coordinate systems. ## What does the name BioCantor mean? [Georg Cantor](https://en.wikipedia.org/wiki/Georg_Cantor) (1845-1918) was a German mathematician who created set theory. BioCantor uses set theoretic concepts, though Cantor's work extended into much more interesting realms than are used here. Cantor devised the elegant [diagonal argument](https://en.wikipedia.org/wiki/Cantor%27s_diagonal_argument) proving that there is more than one level of infinity. Also check out the [Cantor set](https://en.wikipedia.org/wiki/Cantor_set) , which could exist as a genomic feature in a universe where the building blocks of genetic material are uncountably infinite. ## Installation BioCantor can be added to a Python environment as follows. From PyPi: ``` pip install BioCantor ``` Latest release from GitHub: ``` pip install git+https://github.com/InscriptaLabs/BioCantor ``` From source code: ``` cd BioCantor pip install . ``` ## Documentation Full package documentation is available on [Read The Docs](https://biocantor.readthedocs.io/en/latest/). #### To build documentation HTML pages locally Install as above but with `libraries` and `docs` extras: ``` pip install -e .[libraries,docs] ``` You will also need to have [pandoc](https://pandoc.org/) installed. This can be installed using `conda` with ``` conda install -y pandoc ``` You can now build the docs with: ``` cd docs make html ``` ## Support Bug reports, support requests and feature requests should be submitted as issues on GitHub. We will make a reasonable effort to address issues dependent on available resources. ## Contributing Users are invited to submit pull requests. Maintainers reserve the right to close PRs if the requested change is deemed inappropriate for the library or if resources are not available to sufficiently review the PR. Submissions should follow the following guidelines: - Code must adhere to [PEP 8](https://www.python.org/dev/peps/pep-0008/) (as enforced by [Flake8](https://flake8.pycqa.org/en/latest/)) and [Black](https://pypi.org/project/black/) style conventions with maximum line length of 120. - New public elements must be documented with [NumPy style docstrings](https://numpydoc.readthedocs.io/en/latest/format.html) - Comprehensive unit tests must be added for new features. - Full test suite must pass. It is recommended that you run the full test suite locally before pushing to GitHub.

نیازمندی

مقدار	نام
-	biopython
-	marshmallow-dataclass[enum,union]
-	marshmallow
-	methodtools
-	gffutils
-	black
-	flake8
-	pytest
-	pytest-cov
-	pytest-error-for-skips
-	Sphinx
-	sphinx-rtd-theme
-	sphinx-autoapi
-	graphviz
-	nbconvert
-	nbsphinx
-	ipykernel
-	pandoc
-	recommonmark
>=5.1	tornado
-	Sphinx
-	sphinx-rtd-theme
-	sphinx-autoapi
-	graphviz
-	nbconvert
-	nbsphinx
-	ipykernel
-	pandoc
-	recommonmark
-	gffutils
>=5.1	tornado
-	black
-	flake8
-	pytest
-	pytest-cov
-	pytest-error-for-skips

نحوه نصب

نصب پکیج whl BioCantor-0.4.5:

pip install BioCantor-0.4.5.whl

نصب پکیج tar.gz BioCantor-0.4.5:

pip install BioCantor-0.4.5.tar.gz